View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_4 (Length: 601)
Name: NF17657_low_4
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Complemental strand, 1995177 - 1994601
Alignment:
| Q |
11 |
aagaatatgcaacaatcatgtttctcttttgagggtgataattctatttctcaatcttcaaccatacaatatatcaataataatatttttgataatgttt |
110 |
Q |
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| T |
1995177 |
aagaatatgcaacaatcatgtttctcttttgagggtgataattctatttctcaatcttcaaccatacaatatatcaataataatatttttgataatgttt |
1995078 |
T |
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| Q |
111 |
gtgtcatccccacaattctagagaacattctcaagagtagcaatagttccaactctctcatttctcaagaatataattgtcctactaattcacaacaaat |
210 |
Q |
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| T |
1995077 |
gtgtcatccccacaattcaagagaacattctcaagagtagcaatagttccaactctctcatttctcaagaatataattgtcctactaattcacaacaaat |
1994978 |
T |
|
| Q |
211 |
agcaccttctcaatacattttgtcttttgaaaactcaattgtgaaaccttcccctaatagtgccacattttcttctattatggtcccaaaaacaaccttg |
310 |
Q |
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| T |
1994977 |
agcaccttctcaatacattttgtcatttgaaaactcaattatgaaaccttcccctaatagtgccacattttcttctattatggtcccaaaaacaaccttg |
1994878 |
T |
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| Q |
311 |
aacaacaatattgtgagtgaattaccaaagacaattaagaaaagaaccaagaatcttagaagctcttcagagatacaagatcacattatggctgagagaa |
410 |
Q |
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| T |
1994877 |
aacaacaatattgtgagtgaattaccaaagacaattaagaaaagaaccaagaatcttagaagctcttcagagatacaagatcacattatggctgagagaa |
1994778 |
T |
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| Q |
411 |
aaaggagacaagttcttagtgagaggttcatagcactatctgccactatacctggattgaagaaggttagttaatttcttatattaaacccacaatatca |
510 |
Q |
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| T |
1994777 |
aaaggagacaagttcttagtgagaggttcatagcactatctgccactatacctggattgaagaaggttagttaatttcttatattaaacccacaatatca |
1994678 |
T |
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| Q |
511 |
tagataaatcaaagattcatcataatcaagttacaagtgttcaataatttatttcttatataacttttgaagttatt |
587 |
Q |
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| T |
1994677 |
tagataaatcaaagattcatcataatcaagtcacaagtgttcaataatttatttcttataaaacttttgaagttatt |
1994601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 169 - 518
Target Start/End: Complemental strand, 1988061 - 1987708
Alignment:
| Q |
169 |
catttctcaagaatataattgtcctactaattcacaacaaatagcaccttctcaatacattttgtcttttgaaaactcaattgtgaaaccttcccctaat |
268 |
Q |
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|||| |||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| | || ||||||| |||||| |
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| T |
1988061 |
cattgctcaagaatatacttgggctactaattcacaacaattaccaccttctcaatacattttatcttttgaaaactcaactatgcaaccttctcctaat |
1987962 |
T |
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| Q |
269 |
agtgcca------cattttcttctattatggtcccaaaaacaacc---ttgaacaacaatattgtgagtgaattaccaaagacaattaagaaaagaacca |
359 |
Q |
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| T |
1987961 |
agtgacattgcaacatgttcttctatcatggttcaagaaacaacaacattgaataacaatgtgagtagtgaattaccaaagataattaagaaaagaacta |
1987862 |
T |
|
| Q |
360 |
agaatcttagaagctcttcagagatacaagatcacattatggctgagagaaaaaggagacaagttcttagtgagaggttcatagcactatctgccactat |
459 |
Q |
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| T |
1987861 |
agaatcttagaagctcttgtgagatgcaagatcacattatggctgagagaaaaaggagacaagttcttactgaaaggttcatagcactgtctgccactat |
1987762 |
T |
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| Q |
460 |
acctggattgaagaaggttagttaatttcttatattaaacccacaatatcatagataaa |
518 |
Q |
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| T |
1987761 |
acctggattgaagaaggtcagtt----tcttatac-aaacccacaatatcattgataaa |
1987708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 1988136 - 1988081
Alignment:
| Q |
58 |
ttctcaatcttcaaccatacaatatatcaataataatatttttgataatgtttgtgtca |
116 |
Q |
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| T |
1988136 |
ttctcaatcttcaaccatacaatatat---gaataatattgttgacaatgtttgtgtca |
1988081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 419
Target Start/End: Original strand, 45130763 - 45130793
Alignment:
| Q |
389 |
gatcacattatggctgagagaaaaaggagac |
419 |
Q |
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| T |
45130763 |
gatcacattatggctgagagaaaaaggagac |
45130793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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