View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_40 (Length: 287)
Name: NF17657_low_40
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 17811456 - 17811680
Alignment:
| Q |
17 |
ttctctatgttgatgacatgctccttacttcaagaaataagttggaaatcaacaaattgaagcagccattgaattattaatttgaaatgaagcattttgg |
116 |
Q |
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| T |
17811456 |
ttctctacgttgatgacatactccttacttcaagaaataagttggaaatcaacaaattgaagcagcaattgaattatgaatttgaaatgaagcattttgg |
17811555 |
T |
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| Q |
117 |
ggcttccaaaataaccttggccgtggcgattactatcagaaggagagatcagagttgaactgttacaagcaagctacatagagaaagttcttatgaagtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
17811556 |
ggcttccaaaataaccttggccgtggcgattactatcagaaggagagatcagagttgaactcttacaagcaagctacatagagaaagttctaatgaagtt |
17811655 |
T |
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| Q |
217 |
tggaacggaatgtgcaaaaccaatt |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
17811656 |
tggaacggaatgtgcaaaaccaatt |
17811680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 17824385 - 17824609
Alignment:
| Q |
17 |
ttctctatgttgatgacatgctccttacttcaagaaataagttggaaatcaacaaattgaagcagccattgaattattaatttgaaatgaagcattttgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |
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| T |
17824385 |
ttctctatgttgatgacatgctccttacttcaagaaataagttggaaatcaacaaattgaagcagcagttgaattatgaatttgaaatgaagcatttagg |
17824484 |
T |
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| Q |
117 |
ggcttccaaaataaccttggccgtggcgattactatcagaaggagagatcagagttgaactgttacaagcaagctacatagagaaagttcttatgaagtt |
216 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17824485 |
ggattccaaaataaccttggctgtggcgattactatcagaaggagagatcaaagttgaactgttacaagcaagctacatagagaaagttcttatgaagtt |
17824584 |
T |
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| Q |
217 |
tggaacggaatgtgcaaaaccaatt |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
17824585 |
tggaacggaatgtgcaaaaccaatt |
17824609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 45270918 - 45270846
Alignment:
| Q |
17 |
ttctctatgttgatgacatgctccttacttcaagaaataagttggaaatcaacaaattgaagcagccattgaa |
89 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
45270918 |
ttctctatgttgatgacatgctccttatttcaaagaataagttggaaatcaacaaattgaagcaacaattgaa |
45270846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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