View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_41 (Length: 274)

Name: NF17657_low_41
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_41
NF17657_low_41
[»] chr1 (4 HSPs)
chr1 (16-265)||(38855771-38856019)
chr1 (23-101)||(11619803-11619880)
chr1 (20-78)||(24614954-24615011)
chr1 (24-101)||(31091938-31092014)
[»] chr7 (2 HSPs)
chr7 (20-101)||(8937657-8937737)
chr7 (20-101)||(29987864-29987944)
[»] chr4 (9 HSPs)
chr4 (16-101)||(26161266-26161349)
chr4 (20-101)||(40436590-40436670)
chr4 (20-78)||(34277119-34277176)
chr4 (20-101)||(7611842-7611922)
chr4 (20-101)||(7612178-7612258)
chr4 (20-101)||(24319196-24319276)
chr4 (20-101)||(40336075-40336155)
chr4 (24-101)||(47996858-47996934)
chr4 (20-101)||(48315353-48315433)
[»] chr5 (4 HSPs)
chr5 (20-101)||(12291231-12291311)
chr5 (20-78)||(27110826-27110883)
chr5 (16-78)||(35449508-35449569)
chr5 (20-101)||(14718321-14718398)
[»] chr8 (2 HSPs)
chr8 (54-101)||(42199978-42200025)
chr8 (16-44)||(10183055-10183083)
[»] chr2 (1 HSPs)
chr2 (20-78)||(21352188-21352245)
[»] chr3 (1 HSPs)
chr3 (48-101)||(29283159-29283212)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 38856019 - 38855771
Alignment:
Q  16 atcaattatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacattatatataaaacca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38856019 atcaattatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacattatatataaaaccg 38855920  T
Q  116 agggagtagtatatgcattgttcatataaattgaagtgtgcttgtaaggacaacacttttatagagtatttttattcaaaaagaattaattatgagaatt 215  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  38855919 agggagta-tatatgcattgttcatacaaattaaagtgtgcttgcaaggacagaacttttatagagtatttttattcaaaaagaattaattatgagaatt 38855821  T
Q  216 gtcttagtatgaaactctaccaatatttttgtaccaatccatctctgtgc 265  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38855820 gtcttagtatgaaactcaaccaatatttttgtaccaatccatctctgtgc 38855771  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 11619803 - 11619880
Alignment:
Q  23 atttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    |||||| |||||||| |||||| || |||| |||||||||||  |||||||||||| ||  ||||||| ||||||||||    
T  11619803 attttttaaacatatgaagtaataa-taatatagattaaattaatgcaatatataagattaaaaaccatcaagcaacat 11619880  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 24615011 - 24614954
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataa 78  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| |||||||||||||    
T  24615011 attattttttaaacatatgaagtaataa-taatatagattaaattagtgcaatatataa 24614954  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 31091938 - 31092014
Alignment:
Q  24 tttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||| |||||||| |||||| || |||| || |||||||| ||||||||||||| ||  |||| |||||||||||||    
T  31091938 ttttttaaacatatgaagtaataa-taatataaattaaattagtgcaatatataagattaaaaatcaacaagcaacat 31092014  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 8937657 - 8937737
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| ||| |||| |||||| || |||| ||||||||||| || |||||||||||||  ||||||||||||||||||    
T  8937657 attattttttaaatatatgaagtaataa-taatatagattaaattagtacaatatataatattaaaaaccaacaagcaacat 8937737  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 29987864 - 29987944
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| ||||||||||||| ||  ||| ||||||||||||||    
T  29987864 attattttttaaacatatgaagtaataa-taatatagattaaattagtgcaatatataagattaaaatccaacaagcaacat 29987944  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 26161266 - 26161349
Alignment:
Q  16 atcaattatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||||||| |||||||| |||||| || |||| ||||||||||| ||||||||||||| ||  |||| |||||||||||||    
T  26161266 atcaattattttttaaacatatgaagtaataa-taatatagattaaattagtgcaatatataacat-taaaatcaacaagcaacat 26161349  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 40436670 - 40436590
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| || |||||||||| ||  ||||||||||||||||||    
T  40436670 attattttttaaacatatgaagtaataa-taatatagattaaattagtccaatatataagattaaaaaccaacaagcaacat 40436590  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 34277176 - 34277119
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataa 78  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| |||||||||||||    
T  34277176 attattttttaaacatatgaagtaataa-taatatagattaaattagtgcaatatataa 34277119  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 7611922 - 7611842
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| ||||  |||||||  |  ||||||||||||||||||    
T  7611922 attattttttaaacatatgaagtaataa-taatatagattaaattagtgccttatataagtttaaaaaccaacaagcaacat 7611842  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 7612258 - 7612178
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| ||||  |||||||  |  ||||||||||||||||||    
T  7612258 attattttttaaacatatgaagtaataa-taatatagattaaattagtgccttatataagtttaaaaaccaacaagcaacat 7612178  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 24319276 - 24319196
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||| ||| |||||| || |||| ||||||||||| |  |||||||||| ||  ||||||||||||||||||    
T  24319276 attattttttaaacttatgaagtaacaa-taatatagattaaattagcacaatatataagattaaaaaccaacaagcaacat 24319196  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 40336075 - 40336155
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| ||| |||| |||||| || || | || |||||||| ||||||||||||| ||  ||||||||||||||||||    
T  40336075 attattttttaaatatatgaagtaataa-tagtataaattaaattagtgcaatatataagattgaaaaccaacaagcaacat 40336155  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 47996858 - 47996934
Alignment:
Q  24 tttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||| |||||| || |||| |||||||||||  || ||||||||| ||  ||||||||||||||||||    
T  47996858 tttttgaaagatatgaagtaataa-taatatagattaaattaatgtaatatataagattaaaaaccaacaagcaacat 47996934  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 48315353 - 48315433
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    |||||| || |||||||| ||||| | |||||| ||||||||||| ||| ||||||||| |   ||||||||||||||||||    
T  48315353 attattatttaaacatatgaagta-gtaataatatagattaaattagtgaaatatataagaataaaaaccaacaagcaacat 48315433  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 12291231 - 12291311
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||  || ||||||||| ||  |||| || ||||||||||    
T  12291231 attattttttaaacatataaagtaataa-taatgtagattaaattaatgtaatatataagatttaaaatcatcaagcaacat 12291311  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 27110883 - 27110826
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataa 78  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| |||||||||||||    
T  27110883 attattttttaaacatatgaagtaataa-taatatagattaaattagtgcaatatataa 27110826  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 35449508 - 35449569
Alignment:
Q  16 atcaattatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataa 78  Q
    ||||||||||||||||||||||  ||| | || |||| ||||||||||| |||||||||||||    
T  35449508 atcaattatttttgaaacatatgtagtcataa-taatatagattaaattagtgcaatatataa 35449569  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 14718398 - 14718321
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||| |||||||| ||||||    |||| ||||||||||| ||  ||||||||||||  ||||||||||| ||||||    
T  14718398 attattttttaaacatatgaagtaa----taatatagattaaattagtagaatatataatattaaaaaccaacaatcaacat 14718321  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 42199978 - 42200025
Alignment:
Q  54 tagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||||||||| ||||||||||||| ||  ||||||||||||||||||    
T  42199978 tagattaaattagtgcaatatataagattaaaaaccaacaagcaacat 42200025  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 10183055 - 10183083
Alignment:
Q  16 atcaattatttttgaaacatataaagtaa 44  Q
    |||||||||||||||||||||||||||||    
T  10183055 atcaattatttttgaaacatataaagtaa 10183083  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 21352188 - 21352245
Alignment:
Q  20 attatttttgaaacatataaagtaagaaataatgtagattaaatttgtgcaatatataa 78  Q
    ||||||||| |||||||| |||||| || |||| ||||||||||| |||||||||||||    
T  21352188 attattttttaaacatatgaagtaataa-taatatagattaaattagtgcaatatataa 21352245  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 29283212 - 29283159
Alignment:
Q  48 ataatgtagattaaatttgtgcaatatataatatgcaaaaccaacaagcaacat 101  Q
    ||||| |||| |||||| ||||||||||||| ||  ||||||||||||||||||    
T  29283212 ataatatagaataaattagtgcaatatataagattaaaaaccaacaagcaacat 29283159  T

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