View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_46 (Length: 260)
Name: NF17657_low_46
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 39424869 - 39425092
Alignment:
| Q |
8 |
tgagatgaactattatatgttgactatttggatctataatctatatgattgcctcctcctcttgatctatggataaggtaattatagttagtttaataac |
107 |
Q |
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| T |
39424869 |
tgagatgaactattatatgttgactatttggatctata-------tgattgcctcctcctcttgatccatggataaggtaattatagttagtttaataa- |
39424960 |
T |
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| Q |
108 |
nnnnnnnnnnnnagaattaatttt--gagtttagctcggttgatatagactttgtataatatatgtaagagttggtggttcgaacttcaaacatttcact |
205 |
Q |
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| T |
39424961 |
---attttttttagaattaatcctacgagtttagctcggttgatatagactttgtataatatatgtaggagttggtggttcgaacttcaaacatttaact |
39425057 |
T |
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| Q |
206 |
tattcatcaaaaaatgtggatttctagccattaaa |
240 |
Q |
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| T |
39425058 |
tattcatcaaaaaaggtggatttatagccactaaa |
39425092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 29321673 - 29321621
Alignment:
| Q |
183 |
gttcgaacttcaaacatttcacttattcatcaaaaaatgtggatttctagcca |
235 |
Q |
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| T |
29321673 |
gttcgaacttcaatcacttcacttattcatttaaaaaagtgaatttctagcca |
29321621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Original strand, 30350565 - 30350595
Alignment:
| Q |
181 |
tggttcgaacttcaaacatttcacttattca |
211 |
Q |
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| T |
30350565 |
tggttcgaacttcaaacatttcacttattca |
30350595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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