View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_47 (Length: 259)
Name: NF17657_low_47
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 12820013 - 12820244
Alignment:
| Q |
10 |
caaaggcggtcccttaatacagcaagactttgttgaacaactggcacttcatcaacctcacgagggggcaacaagcgcgtgtatgtctcggtactaagat |
109 |
Q |
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| T |
12820013 |
caaaggcggtcccttaatacagcaagactttgttgaacaactggcacttcatcaacctcacgagggggcagcaagcgcgtgtatatctcggtactaagat |
12820112 |
T |
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| Q |
110 |
caagggagataatcataagttgttcaacagtaaaatccttctcactatacttaaaactcttatttggattggaaaaccagtaaacagtgccattcaaata |
209 |
Q |
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| T |
12820113 |
caagggagataatcataagttgttcaacagtaaaatccttctcactatacttaaaactcttattcggattggaaaaccagtaaacagtgccattcaaata |
12820212 |
T |
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| Q |
210 |
cacaccttcattaaacataatgccaagataaa |
241 |
Q |
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| T |
12820213 |
cacaccttcattaaacataatgccaagataaa |
12820244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 19326123 - 19326221
Alignment:
| Q |
51 |
tggcacttcatcaacctcacgagggggcaacaagcgcgtgtatgtctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatcctt |
149 |
Q |
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| T |
19326123 |
tggcacttcatcaacaccacgaggggtctgaaattgcttgtatgtctcagtaccaagatcaagggagataatcataaattgctcgacggtaatatcctt |
19326221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 19344751 - 19344813
Alignment:
| Q |
89 |
tgtatgtctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatccttct |
151 |
Q |
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| T |
19344751 |
tgtatgtctcggtaccaagatcaagggagataatcacaaatttcccaacagtaatatccttct |
19344813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 19374661 - 19374626
Alignment:
| Q |
89 |
tgtatgtctcggtactaagatcaagggagataatca |
124 |
Q |
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| T |
19374661 |
tgtatgtctcggtaccaagatcaagggagataatca |
19374626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 24254602 - 24254662
Alignment:
| Q |
89 |
tgtatgtctcggtactaagatcaagggagataatcataagttgttcaacagtaaaatcctt |
149 |
Q |
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| T |
24254602 |
tgtatgtctcagtaccaagatcaagggagataatcatgaattgctcaacggtaatatcctt |
24254662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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