View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_49 (Length: 257)
Name: NF17657_low_49
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 81 - 243
Target Start/End: Original strand, 34776094 - 34776256
Alignment:
| Q |
81 |
gagagtttttgggattttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttc |
180 |
Q |
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| T |
34776094 |
gagagtttttgggattttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttc |
34776193 |
T |
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| Q |
181 |
tccaagagaacaaacgcgtgttcgagggtttggagtctcttgttgatgttggaggtggtactg |
243 |
Q |
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| T |
34776194 |
tccaagagaataaacgcgttttcgagggtttggagtctcttgttgatgttggaggtggtactg |
34776256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 89 - 229
Target Start/End: Original strand, 34784314 - 34784454
Alignment:
| Q |
89 |
ttgggattttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagag |
188 |
Q |
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| T |
34784314 |
ttgggattttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgag |
34784413 |
T |
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| Q |
189 |
aacaaacgcgtgttcgagggtttggagtctcttgttgatgt |
229 |
Q |
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| T |
34784414 |
aacaagaatgtgtttgagggtttggaatctcttgttgatgt |
34784454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34776038 - 34775955
Alignment:
| Q |
1 |
gaggaactccacatgtctaaagaacttggatgaagtgctcctttaacaattgaagataaacatgttggttttccacttatgaga |
84 |
Q |
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| T |
34776038 |
gaggaactccacatgtctaaagaacttggatgaagtgctcctttaacaattgaagataaacatgttggttttccacttatgaga |
34775955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 34784243 - 34784167
Alignment:
| Q |
8 |
tccacatgtctaaagaacttggatgaagtgctcctttaacaattgaagataaacatgttggttttccacttatgaga |
84 |
Q |
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| T |
34784243 |
tccacatgtctatagaacttgcatgaagcgctccttcaataagcgttgataaacatgtcgattttccacttatgaga |
34784167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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