View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17657_low_5 (Length: 581)
Name: NF17657_low_5
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_5 |
 | |
|
| [»] scaffold1439 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Original strand, 34988980 - 34989540
Alignment:
| Q |
13 |
actccataaggttgctcgttttcccaaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34988980 |
actccataaggttgctcgttttcccaaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaa |
34989079 |
T |
|
| Q |
113 |
agaagtggaagatatggtttccaaatccaaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatag |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34989080 |
agaagtgaaagatatggtttccaaatccaaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatcg |
34989179 |
T |
|
| Q |
213 |
atgaagctgaagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
34989180 |
atgaagctgaagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatctctgtagttgggat |
34989279 |
T |
|
| Q |
313 |
gggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989280 |
gggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca |
34989379 |
T |
|
| Q |
413 |
tacaatattgaagaattgttgagatgcatgttggagaagctttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcat |
512 |
Q |
| |
|
|||| | ||||| ||||| |||| ||||||||||||||||||| ||||||||||||| | |||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
34989380 |
aacaacactgaagtattgtcgagacacatgttggagaagctttacggacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcat |
34989479 |
T |
|
| Q |
513 |
tgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989480 |
tgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
34989540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 37 - 573
Target Start/End: Original strand, 34979947 - 34980485
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
34979947 |
caaaactatgactcctcttcgtcaaatagcatctgagattcaagacatcaagtcagttgtttgtgggatcaaagaaagaagtgaaagatatggtttccaa |
34980046 |
T |
|
| Q |
137 |
atccaaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcgtaggctttc |
236 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||||||||||||||||||| | ||| ||||||| |||||||||| |
|
|
| T |
34980047 |
atccaaggatctagcagctttcgaggaatccaaaatgccaaatggcacgacccacgaatggctgctttatacatcaacgaatctgaagttgtaggctttc |
34980146 |
T |
|
| Q |
237 |
aagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgt--catcaccgtagttgggatgggagggcaaggaaaaaccact |
334 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||| ||| |
|
|
| T |
34980147 |
aagaacccaaaaatagattgattgattggttggtaaagggaagagtagagcgcactgtgtcatctctgtagttggaatgggagggcaaggaaaaataact |
34980246 |
T |
|
| Q |
335 |
cttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttga |
434 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
34980247 |
cttgctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattgctga |
34980346 |
T |
|
| Q |
435 |
gatgcatgttggagaagctttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctgagttgagaaagta |
534 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||||||| |||||||||||| || |
|
|
| T |
34980347 |
gacgcatgttgaagaagctttacgaacaaaaaggagaacatcctcttgaagatatcactgaaatggatcgagatgcattgatttatgagttgagaaatta |
34980446 |
T |
|
| Q |
535 |
cttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34980447 |
cttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
34980485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 141 - 573
Target Start/End: Original strand, 34975273 - 34975705
Alignment:
| Q |
141 |
aaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcgtaggctttcaaga |
240 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
34975273 |
aaggatctagcagctttagaggagtccaaaatgccaaatggcacgatccacgaatggctgctttattcatcgatgaagctgaagttgtaggctttcaaga |
34975372 |
T |
|
| Q |
241 |
acccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgct |
340 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975373 |
acccaaaaaaatattgattgattgtttggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgct |
34975472 |
T |
|
| Q |
341 |
aaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgca |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||||| |||| || |
|
|
| T |
34975473 |
aaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcacacaacactgaagtattgtcgagacaca |
34975572 |
T |
|
| Q |
441 |
tgttggagaagctttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctgagttgagaaagtacttgca |
540 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975573 |
tgttggagaagctttacggacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgca |
34975672 |
T |
|
| Q |
541 |
gaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34975673 |
gaaaaagaggtatgtttttgtgtttgatgatgt |
34975705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 359 - 573
Target Start/End: Complemental strand, 2305842 - 2305628
Alignment:
| Q |
359 |
aaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagctttaca |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||||||| || |
|
|
| T |
2305842 |
aaagaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacg |
2305743 |
T |
|
| Q |
459 |
aacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttt |
558 |
Q |
| |
|
||||||||| |||| || ||| |||| ||| | ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2305742 |
aacaaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttt |
2305643 |
T |
|
| Q |
559 |
tgtgtttgatgatgt |
573 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
2305642 |
tgtgtttgataatgt |
2305628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 37 - 573
Target Start/End: Complemental strand, 22657760 - 22657209
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||||||||| | |||||||||||||||| | |||||||||| || |||||| |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
22657760 |
caaaactatgaattctcgccgtcaaatagcgttcaagattcaagagattaagtcatttgtttgtgggatcaaagaaagaagtgaaagatatggtttccaa |
22657661 |
T |
|
| Q |
137 |
atccaa---------------ggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatagatgaagctg |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||| ||||||||| | || | |||||||||||||||||||| |||||||| | |
|
|
| T |
22657660 |
atccaaccttcttctcaacaaggatctacaagctttagaggaagccaaactgccaaatggcatgaccctcgaatggctgctttatacattgatgaagcgg |
22657561 |
T |
|
| Q |
222 |
aagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggca |
321 |
Q |
| |
|
|| | |||||||||||| ||||||||| ||||| | |||||| |||||||||||||| ||||||||||||||| | || || || ||||||||||| |
|
|
| T |
22657560 |
aaattataggctttcaagcacccaaaaaaagattagtagattggttggtaaagggaagatcagagcgcactgtcatatctgtcgtgggaatgggagggca |
22657461 |
T |
|
| Q |
322 |
aggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatatt |
421 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
22657460 |
aggaaaaactactcttgctaaaaaagtttttgacagcaaagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatata |
22657361 |
T |
|
| Q |
422 |
gaagaattgttgagatgcatgttggagaagctttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctg |
521 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
22657360 |
gaagtgttgttgagacgcatgttgaaggagctttacaaacaaaaaggagacaatcctcctcaagatatcactgaaatggatcgaggcgcattgatttctg |
22657261 |
T |
|
| Q |
522 |
agttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22657260 |
agctgagaaaatacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
22657209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 140 - 573
Target Start/End: Complemental strand, 22621490 - 22621057
Alignment:
| Q |
140 |
caaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcgtaggctttcaag |
239 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| || |||||| | || | ||||||||||||||||| || |||||| ||||| | ||||||||||||| |
|
|
| T |
22621490 |
caaggatcaagccactttagaggaagccaaaaggcgaaatggcatgaccctcgaatggctgctttatatattgatgaatctgaaattgtaggctttcaag |
22621391 |
T |
|
| Q |
240 |
aacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgc |
339 |
Q |
| |
|
||||||||||||||||||||| | | |||| | ||||||| |||||| ||||||||| | || || || |||||||| ||||||||| |||||||||| |
|
|
| T |
22621390 |
aacccaaaaatagattgattggattgttggtggatggaagagaagagcgaactgtcatctctgtggtaggaatgggaggacaaggaaaatccactcttgc |
22621291 |
T |
|
| Q |
340 |
taaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgc |
439 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||| |||| |||||||||| |||||||||||||||||||| |||| || | ||| |||||| | |
|
|
| T |
22621290 |
caaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacgatatagaggggttgctgagatac |
22621191 |
T |
|
| Q |
440 |
atgttggagaagctttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctgagttgagaaagtacttgc |
539 |
Q |
| |
|
|||||| || || ||||| ||||||||||||| | ||| || |||| ||| || ||||||||| ||| ||||||||||| |||||||||| |||||| |
|
|
| T |
22621190 |
atgttgaaggagatttaccaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgc |
22621091 |
T |
|
| Q |
540 |
agaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| |
|
|
| T |
22621090 |
aacaaaagaggtatgtttttgtatttgatgatgt |
22621057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 191 - 566
Target Start/End: Complemental strand, 22648683 - 22648309
Alignment:
| Q |
191 |
cgaatggctgctttatacatagatgaagctgaagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgca |
290 |
Q |
| |
|
|||| ||||||||||||||| | |||||| ||| | |||||| |||||| ||| | ||| | |||||| |||| ||||| |||||||| |||||||| |
|
|
| T |
22648683 |
cgaacggctgctttatacattggtgaagcagaaatggtaggccttcaagcaccaagaaaacaaatgattggttggttggtagagggaagatcagagcgca |
22648584 |
T |
|
| Q |
291 |
ctgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgt |
390 |
Q |
| |
|
|||||||| | || || || |||||||||| |||||||||||||||||| | ||| || ||||| ||||||||||| | |||||||||||||| |||||| |
|
|
| T |
22648583 |
ctgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttgacagcaaagaggtagcgggacactttgaatttcgtgt |
22648484 |
T |
|
| Q |
391 |
atggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagctttacaaacaaaaaggagaacatcctcctgaagacatc |
490 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| |||| ||| ||||| |||||||| | ||||||||||||||||||||||| | |||||| ||| ||| |
|
|
| T |
22648483 |
atggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttgaatgagctttacaaacaaaaaggagaagagcctcctaaaggtatc |
22648384 |
T |
|
| Q |
491 |
actaaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgtttttgtgtttg |
566 |
Q |
| |
|
| ||||||||| |||| | |||||||||||| ||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
22648383 |
tcgaaaatggat-gagggtcgttgatttctgagctgagaaactacttgcaacaaaagaggtatgttttcgtgtttg |
22648309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 267 - 435
Target Start/End: Complemental strand, 22615708 - 22615540
Alignment:
| Q |
267 |
tggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggt |
366 |
Q |
| |
|
||||||| |||||||||||||||||||| || | || || || ||||||||||| || |||||||||||||| || || |||||||||||||| ||||| |
|
|
| T |
22615708 |
tggtaaaaggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggt |
22615609 |
T |
|
| Q |
367 |
tgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgag |
435 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||| |||||||| |
|
|
| T |
22615608 |
ttgtggacactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgag |
22615540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 177 - 471
Target Start/End: Original strand, 22186915 - 22187209
Alignment:
| Q |
177 |
aatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaaaggg |
276 |
Q |
| |
|
|||||||||| | ||| |||||||| | ||||| || |||||||| || || || ||| ||| || | ||| ||||||||||| ||| |||||||||| |
|
|
| T |
22186915 |
aatggaacgaccctcgagtggctgctctttacatcgaggaagctgaggttgtgggatttgaagcgccaagaaaaagattgattgagtggatggtaaaggg |
22187014 |
T |
|
| Q |
277 |
aagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacac |
376 |
Q |
| |
|
||| | |||||||||||| | | || || || |||||||||||||||||||| ||||| || || || |||||||| ||||| || | |||||||| |
|
|
| T |
22187015 |
aagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacac |
22187114 |
T |
|
| Q |
377 |
tttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagctttacaaacaaaaaggaga |
471 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||| ||| ||||| |||||||||| ||||||| ||| ||| ||||||||||||||| |
|
|
| T |
22187115 |
tttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaaggaga |
22187209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 173 - 470
Target Start/End: Original strand, 22027923 - 22028220
Alignment:
| Q |
173 |
gccaaatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaa |
272 |
Q |
| |
|
|||||||||||||| | ||| |||||||| | ||||| || |||||||| || || || ||| ||| || | ||| ||||||| ||||||| ||||| |
|
|
| T |
22027923 |
gccaaatggaacgaccctcgagtggctgctctttacatcgaggaagctgaggttgtgggatttgaagcgccaagaaaaagattgactgattggttggtac |
22028022 |
T |
|
| Q |
273 |
agggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtggg |
372 |
Q |
| |
|
||||||| | |||||||||||| | | || || || |||||||||||||||||||| ||||| || || || |||||||| ||||| || | |||| |
|
|
| T |
22028023 |
agggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatggg |
22028122 |
T |
|
| Q |
373 |
acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagctttacaaacaaaaaggag |
470 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||| ||| ||||| |||||||||| ||||||| ||| ||| |||||||||||||| |
|
|
| T |
22028123 |
acactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaaggag |
22028220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 254 - 481
Target Start/End: Original strand, 21937157 - 21937384
Alignment:
| Q |
254 |
ttgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttg |
353 |
Q |
| |
|
|||||||||||| || |||||||||| | |||||||||||| | | || || || |||||||||||||||||||||||||| ||||| || | ||||| |
|
|
| T |
21937157 |
ttgattgattggatgataaagggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttg |
21937256 |
T |
|
| Q |
354 |
atagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagct |
453 |
Q |
| |
|
| ||||| || || || ||||||||||| ||||||||||||||||||||||| ||| |||| || |||||| ||||||| ||||||| ||| | |
|
|
| T |
21937257 |
acagcaaggatgtcgttggacactttgattgtcgtgtatggatcacagtgtctcaagcatatgatgttgaagggttgttgaaggacatgttgctcaagtt |
21937356 |
T |
|
| Q |
454 |
ttacaaacaaaaaggagaacatcctcct |
481 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
21937357 |
ttacaaacaaaaaggagaggatcctcct |
21937384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 254 - 573
Target Start/End: Complemental strand, 30989767 - 30989448
Alignment:
| Q |
254 |
ttgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttg |
353 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| || || | ||||| || |||||||||||||| |||||||||||| | || || ||||||| |
|
|
| T |
30989767 |
ttgattgattggttggtaaagggaagagatgagcgcacggtaatttctgtagtaggcatgggagggcaaggtaaaaccactcttacgaagaaagtttttg |
30989668 |
T |
|
| Q |
354 |
atagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagct |
453 |
Q |
| |
|
| | || | || | ||||||||||| |||||||||||||||| |||||| |||||||| | | |||||| |||||||| ||||||| ||| | |
|
|
| T |
30989667 |
acaacaggaatgtcattggacactttgattgtcgtgtatggatcatagtgtctcaatcatatactgttgaagggttgttgagggacatgttgctaaagtt |
30989568 |
T |
|
| Q |
454 |
ttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtat |
553 |
Q |
| |
|
|||||||||||| | |||| |||||||| | || || | ||||||||||||| |||||| | ||| ||||||| ||||||| | ||| |||||| |
|
|
| T |
30989567 |
ttacaaacaaaacgaagaagatcctcctaaggatatttttcaaatggatcgagggtcattgactgatgaagtgagaaactacttgcggttaaaaaggtat |
30989468 |
T |
|
| Q |
554 |
gtttttgtgtttgatgatgt |
573 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
30989467 |
gtcgttgtgtttgatgatgt |
30989448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 37 - 471
Target Start/End: Original strand, 21945402 - 21945845
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||||||||| ||||| |||| |||||| |||||||||||||| | |||||| |||| |||| ||||| ||||||||||||| |||||| || ||| |
|
|
| T |
21945402 |
caaaactatgatccctcgtcgtcgaatagcatctgagattcaagatgttaagtcatatgttcgtgggatcaaggaaagaagtggaacatatggctttcaa |
21945501 |
T |
|
| Q |
137 |
a--tc-------caaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcg |
227 |
Q |
| |
|
|| |||||||| ||||||| ||| |||| ||| || ||||||||| |||| | || ||||||| | ||||| || ||||||||||| | |
|
|
| T |
21945502 |
cgttcttttgaacaaggatcaagcagctctaggggaagccagaatgccaaatggcacgaccctcggcaggctgctctttacattgacgaagctgaagttg |
21945601 |
T |
|
| Q |
228 |
taggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaa |
327 |
Q |
| |
|
| || || || ||| || | | |||||||||||| ||||||||||||| | ||||||||||| | |||| || || ||||||||||||||||| |
|
|
| T |
21945602 |
tgggtttcgaaaaacaaaaggacatgttgattgattggatggtaaagggaagggaggagcgcactgtagtttccgtggtaggaatgggagggcaaggaaa |
21945701 |
T |
|
| Q |
328 |
aaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaa |
427 |
Q |
| |
|
||||||||| || || || |||||||| ||||| || || | |||||||||| |||| |||||||||||| ||||| |||||||| || |||||| | |
|
|
| T |
21945702 |
aaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctcaatcatatgatgttgaagga |
21945801 |
T |
|
| Q |
428 |
ttgttgagatgcatgttggagaagctttacaaacaaaaaggaga |
471 |
Q |
| |
|
|||||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
21945802 |
ttgttgagggacatgttgctaaaacttcacaaacaaaaaggaga |
21945845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 470
Target Start/End: Original strand, 22034518 - 22034737
Alignment:
| Q |
251 |
agattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttt |
350 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | |||||||||||| | | || || || |||||||||||||||||||| ||||| || || || |||| |
|
|
| T |
22034518 |
agattgattgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagttt |
22034617 |
T |
|
| Q |
351 |
ttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaa |
450 |
Q |
| |
|
|||| ||||| || | ||||||||||||| | |||||||||||| |||||||| |||||||| ||| ||||| |||||||||| ||||||| || |
|
|
| T |
22034618 |
ttgacagcaaggatatcatgggacactttgattatcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaa |
22034717 |
T |
|
| Q |
451 |
gctttacaaacaaaaaggag |
470 |
Q |
| |
|
| ||| |||| ||||||||| |
|
|
| T |
22034718 |
ggtttgcaaagaaaaaggag |
22034737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 470
Target Start/End: Original strand, 22179418 - 22179637
Alignment:
| Q |
251 |
agattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttt |
350 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||| | ||| || || |||||||||||||||||||| ||||| || || || |||| |
|
|
| T |
22179418 |
agattgattgattggatggtacagggaaggaaagagcgcactgtggtattcgtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagttt |
22179517 |
T |
|
| Q |
351 |
ttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaa |
450 |
Q |
| |
|
|||| ||||| || | | ||||||||||| |||||||||||||| |||||||| |||||||| ||| ||||| |||||||||| ||||||| || |
|
|
| T |
22179518 |
ttgacagcaaggatatcattggacactttgattgtcgtgtatggattacagtgtctcaatcatataatgctgaaggattgttgagagacatgttgctaaa |
22179617 |
T |
|
| Q |
451 |
gctttacaaacaaaaaggag |
470 |
Q |
| |
|
| ||| |||||||||||||| |
|
|
| T |
22179618 |
gatttgcaaacaaaaaggag |
22179637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 251 - 414
Target Start/End: Original strand, 22115086 - 22115249
Alignment:
| Q |
251 |
agattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttt |
350 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | |||||||||||| | | || || || |||||||||||||||||||||||||| | || || |||| |
|
|
| T |
22115086 |
agattgattgattggatggtatagggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactctatcaaagaaagttt |
22115185 |
T |
|
| Q |
351 |
ttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcata |
414 |
Q |
| |
|
|||| ||||| || | | ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
22115186 |
ttgacagcaaggatatcattggacactttgattgtcgtgtatggatcacagtgtctcaatcata |
22115249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 253 - 573
Target Start/End: Original strand, 21930424 - 21930744
Alignment:
| Q |
253 |
attgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttttt |
352 |
Q |
| |
|
||||||||||||| ||||| ||||||| | |||||||||||| | | || || || |||||||||||||||||||| ||||| || || || |||||| |
|
|
| T |
21930424 |
attgattgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagttttt |
21930523 |
T |
|
| Q |
353 |
gatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaagc |
452 |
Q |
| |
|
|| ||||| || | | ||||| ||| | | || ||||||||||||||||| |||||||| || |||||| |||||||| ||||||| || |
|
|
| T |
21930524 |
gacagcaaggatatcattggacattttcatttccgagtatggatcacagtgtctcaatcatatgatgttgaagggttgttgagggacatgttgctaaaaa |
21930623 |
T |
|
| Q |
453 |
tttacaaacaaaaaggagaacatcctcctgaagacatcactaaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggta |
552 |
Q |
| |
|
|||||||||||| |||||| ||||| || | || | | ||||||||||||| |||||| | |||| ||||||| | |||||||||||||||||| |
|
|
| T |
21930624 |
tttacaaacaaataggagacaatcctactcagaacttttatcaaatggatcgaggatcattgactgctgaagtgagaaaatgcttgcagaaaaagaggta |
21930723 |
T |
|
| Q |
553 |
tgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
21930724 |
tgttgtcgtgtttgatgatgt |
21930744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 37 - 405
Target Start/End: Original strand, 22104501 - 22104878
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
|||||||||||| ||||||| || |||||| ||||||||||||| | |||||| |||| |||| ||||| |||||||||| | ||||||| |||||| |
|
|
| T |
22104501 |
caaaactatgacccctcgccatcgaatagcagctgagattcaagatgttaagtcatctgttcgtgggatcaaggaaagaagtgaacgatatggcttccaa |
22104600 |
T |
|
| Q |
137 |
--atc-------caaggatctagcagctttagaggaaaccaaaacgccaaatggaacgatcaacgaatggctgctttatacatagatgaagctgaagtcg |
227 |
Q |
| |
|
|| |||||||| ||||| | |||| ||||| ||| ||||||||| |||| | ||| | |||||| | ||||| || |||||||| || | |
|
|
| T |
22104601 |
ccttcttttgaacaaggatcaagcagttcaagagaaaaccgaaatgccaaatggcacgaccctcgagttgctgctctttacattgaggaagctgatgttg |
22104700 |
T |
|
| Q |
228 |
taggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaa |
327 |
Q |
| |
|
| || || ||| ||| | ||| ||||||||||||||| |||||||||||| | |||||||||||| | | || || || ||||||||||||||||| |
|
|
| T |
22104701 |
tgggattcaaagcaccaagaaaaagattgattgattggatggtaaagggaacggaagagcgcactgtagtttcggtggtaggaatgggagggcaaggaaa |
22104800 |
T |
|
| Q |
328 |
aaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtc |
405 |
Q |
| |
|
||| ||||| || || | |||||||| ||||| || || | ||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
22104801 |
aacaactctagccaagagagtttttgacagcaaggatgtaattggacactttgattgtcatgtttggatcacagtgtc |
22104878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 305 - 405
Target Start/End: Original strand, 22208075 - 22208175
Alignment:
| Q |
305 |
gttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgt |
404 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || | |||||||| |||||||||||| | ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
22208075 |
gttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaagaggttattggatactttgattgtcgtgtatggatcacagtgt |
22208174 |
T |
|
| Q |
405 |
c |
405 |
Q |
| |
|
| |
|
|
| T |
22208175 |
c |
22208175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 251 - 471
Target Start/End: Original strand, 22052734 - 22052954
Alignment:
| Q |
251 |
agattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttt |
350 |
Q |
| |
|
||||||||||||||| ||||||||||||| | |||||||||||| | | | || || |||||||||||||||||||| ||||| || || || |||| |
|
|
| T |
22052734 |
agattgattgattggatggtaaagggaagggaagagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagttt |
22052833 |
T |
|
| Q |
351 |
ttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaa |
450 |
Q |
| |
|
|||| ||||| || | | ||||| ||||| ||||| |||||||| |||||||| |||||||| || |||||| |||||||| |||||| || |
|
|
| T |
22052834 |
ttgacagcaaggatatcattggacattttgattgtcgggtatggattacagtgtctcaatcatatgatgttgaagggttgttgagggaaatgttgctaaa |
22052933 |
T |
|
| Q |
451 |
gctttacaaacaaaaaggaga |
471 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22052934 |
actttacaaacaaaaaggaga |
22052954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 435
Target Start/End: Complemental strand, 22468411 - 22468229
Alignment:
| Q |
253 |
attgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggttttt |
352 |
Q |
| |
|
||||||||||| | ||||| ||||||||| ||||||||| || || || ||||||| |||||||| | |||||||||||| | || || || |||||| |
|
|
| T |
22468411 |
attgattgatttgttggtagagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagttttt |
22468312 |
T |
|
| Q |
353 |
gatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgag |
435 |
Q |
| |
|
|| | | || |||| || ||| ||||| |||| |||||||||||| ||||| | | |||||||||| ||| |||||||||| |
|
|
| T |
22468311 |
gacaaccaaaaggtcgttaaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgag |
22468229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 22458892 - 22458780
Alignment:
| Q |
313 |
gggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca |
412 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||||||||| ||| || | || ||||||||| |||| ||||||||||| |||||| |||||| |
|
|
| T |
22458892 |
gggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatca |
22458793 |
T |
|
| Q |
413 |
tacaatattgaag |
425 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
22458792 |
tacaatatagaag |
22458780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 22481873 - 22481761
Alignment:
| Q |
313 |
gggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca |
412 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||||||||| ||| || | || ||||||||| |||| ||||||||||| |||||| |||||| |
|
|
| T |
22481873 |
gggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatca |
22481774 |
T |
|
| Q |
413 |
tacaatattgaag |
425 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
22481773 |
tacaatatagaag |
22481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 435
Target Start/End: Complemental strand, 22437137 - 22436915
Alignment:
| Q |
213 |
atgaagctgaagtcgtaggctttcaagaacccaaaaatagattgattgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggat |
312 |
Q |
| |
|
|||||||||| ||||| |||||| |||| |||||| | |||| || |||||||||| | ||||||||||||||| | || || | | || || || |
|
|
| T |
22437137 |
atgaagctgatgtcgtgggctttgaagagcccaaacgcatattgtttaattggctggtgaggggaagagtagagcgtgcagttgtctctattgtaggaat |
22437038 |
T |
|
| Q |
313 |
gggagggcaaggaaaaaccactcttgctaaaaaggtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatca |
412 |
Q |
| |
|
|||||||||||||||||| ||||| || || || |||||||| | || | || | ||| ||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
22437037 |
gggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacagtgtctcaatca |
22436938 |
T |
|
| Q |
413 |
tacaatattgaagaattgttgag |
435 |
Q |
| |
|
|||| || ||| |||||||||| |
|
|
| T |
22436937 |
tacagtaaagaaaaattgttgag |
22436915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 30989980 - 30989894
Alignment:
| Q |
50 |
cctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||| |||| |||||| ||||||||||||||||| ||||| |||| ||| ||||| |||||||||| ||||||||| |||||| |
|
|
| T |
30989980 |
cctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggcttccaa |
30989894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 21936945 - 21937030
Alignment:
| Q |
51 |
ctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
|||||| || |||||| |||||||||||||||| |||||| |||| |||| ||||| |||||||||| |||||| |||||||| |
|
|
| T |
21936945 |
ctcgccatcgaatagcagctgagattcaagacattaagtcatctgttcgtgggatcaaggaaagaagtgatagatatagtttccaa |
21937030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 525 - 573
Target Start/End: Original strand, 22115360 - 22115408
Alignment:
| Q |
525 |
tgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| | |||||||||||||| |
|
|
| T |
22115360 |
tgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt |
22115408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 22034295 - 22034394
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||||||||| ||||| |||| |||||| |||||||| ||||| | ||| || |||| |||| |||| ||||||||||| ||||||||| |||||| |
|
|
| T |
22034295 |
caaaactatgatccctcgtcgtcgaatagcatctgagatacaagatgttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttccaa |
22034394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 22114863 - 22114962
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||||||||| ||||| |||| |||||| |||||||| ||||| | ||| || |||| |||| |||| ||||||||||| ||||||||| |||||| |
|
|
| T |
22114863 |
caaaactatgatccctcgtcgtcgaatagcatctgagatacaagattttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttccaa |
22114962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 573
Target Start/End: Complemental strand, 22615457 - 22615411
Alignment:
| Q |
527 |
agaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
22615457 |
agaaactacttgcagcaaaagaggtacgttgttgtgtttgatgatgt |
22615411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 22621608 - 22621503
Alignment:
| Q |
37 |
caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtggaagatatggtttccaa |
136 |
Q |
| |
|
||||||||||| ||||||| || |||||| || ||||||||| ||| |||||| ||| ||| ||||| |||||||||| ||| ||||| |||||| |
|
|
| T |
22621608 |
caaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttccaa |
22621509 |
T |
|
| Q |
137 |
atccaa |
142 |
Q |
| |
|
|||||| |
|
|
| T |
22621508 |
atccaa |
22621503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 573
Target Start/End: Original strand, 21945899 - 21945947
Alignment:
| Q |
525 |
tgagaaagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| | || ||||||||||| |
|
|
| T |
21945899 |
tgagaaattacttgcagcaaaagaggtatgttgtcgtctttgatgatgt |
21945947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 433
Target Start/End: Complemental strand, 22431495 - 22431435
Alignment:
| Q |
373 |
acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttg |
433 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| ||| |||| |||| ||| |||||||| |
|
|
| T |
22431495 |
acactttgattgtcgtttatggatcacagtgtctcaaccatatgatatagaaaaattgttg |
22431435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 29610902 - 29610805
Alignment:
| Q |
385 |
tcgtgtatggatcacagtgtcacaatcatacaatattgaagaattgttgagatgcatgttggagaag-ctttacaaacaaaaaggagaacatcctcct |
481 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||| | || |||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
29610902 |
tcgtgtatggatcacagtatcacaatcatacaatatagaaggattgctaaggggcatgttggagaagtttttacaaacaaaagggagatgatcctcct |
29610805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 410
Target Start/End: Original strand, 27294556 - 27294708
Alignment:
| Q |
258 |
ttgattggctggtaaagggaagagtagagcgcactgtcatcaccgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatag |
357 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||| | | || || || |||||||| ||||||||||||||||| | || || |||||||| || |
|
|
| T |
27294556 |
ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacag |
27294655 |
T |
|
| Q |
358 |
caaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaat |
410 |
Q |
| |
|
||| || || | |||||| |||| | ||||||||||||||||||||| |||| |
|
|
| T |
27294656 |
caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat |
27294708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 545 - 573
Target Start/End: Complemental strand, 1808 - 1780
Alignment:
| Q |
545 |
aagaggtatgtttttgtgtttgatgatgt |
573 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1808 |
aagaggtatgtttttgtgtttgatgatgt |
1780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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