View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_54 (Length: 249)

Name: NF17657_low_54
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_54
NF17657_low_54
[»] chr4 (11 HSPs)
chr4 (137-242)||(3672361-3672465)
chr4 (1-96)||(3445570-3445665)
chr4 (137-242)||(6112717-6112820)
chr4 (137-242)||(28093096-28093200)
chr4 (137-242)||(7217852-7217956)
chr4 (137-242)||(44275793-44275896)
chr4 (137-228)||(49243916-49244005)
chr4 (137-223)||(21390956-21391040)
chr4 (138-228)||(35545013-35545102)
chr4 (99-135)||(3445690-3445726)
chr4 (137-204)||(46192484-46192550)
[»] chr5 (10 HSPs)
chr5 (137-241)||(13347216-13347319)
chr5 (137-242)||(39371014-39371118)
chr5 (137-242)||(2237363-2237467)
chr5 (153-242)||(9408054-9408143)
chr5 (137-242)||(14831631-14831735)
chr5 (137-242)||(40887942-40888046)
chr5 (137-242)||(42683686-42683790)
chr5 (137-241)||(31800646-31800748)
chr5 (137-242)||(1815620-1815720)
chr5 (151-242)||(27553387-27553477)
[»] chr3 (11 HSPs)
chr3 (160-242)||(22894767-22894849)
chr3 (137-242)||(48200772-48200876)
chr3 (138-242)||(36749493-36749596)
chr3 (137-242)||(34749898-34750002)
chr3 (137-242)||(36370338-36370442)
chr3 (137-242)||(44000076-44000180)
chr3 (137-242)||(21559648-21559752)
chr3 (137-242)||(46111944-46112048)
chr3 (137-242)||(51339784-51339887)
chr3 (137-237)||(29472901-29472999)
chr3 (137-236)||(30735496-30735594)
[»] chr7 (17 HSPs)
chr7 (137-242)||(26972203-26972307)
chr7 (137-242)||(34108513-34108617)
chr7 (137-242)||(36346565-36346668)
chr7 (138-242)||(30887787-30887890)
chr7 (137-242)||(28307495-28307599)
chr7 (137-242)||(45782660-45782764)
chr7 (137-235)||(29953572-29953669)
chr7 (137-242)||(7699883-7699987)
chr7 (137-242)||(7700081-7700185)
chr7 (137-242)||(7700279-7700383)
chr7 (137-242)||(7700477-7700581)
chr7 (137-242)||(34828152-34828255)
chr7 (137-242)||(5811164-5811267)
chr7 (137-242)||(31148377-31148480)
chr7 (138-242)||(21807324-21807426)
chr7 (137-228)||(42220964-42221053)
chr7 (137-212)||(13108264-13108337)
[»] scaffold0062 (1 HSPs)
scaffold0062 (137-242)||(6805-6909)
[»] chr8 (10 HSPs)
chr8 (137-242)||(42162685-42162789)
chr8 (151-242)||(44081867-44081958)
chr8 (137-242)||(31318892-31318996)
chr8 (137-242)||(10203751-10203855)
chr8 (137-241)||(43186115-43186217)
chr8 (137-236)||(12665438-12665536)
chr8 (137-242)||(18184640-18184743)
chr8 (151-242)||(30432426-30432516)
chr8 (127-242)||(36189303-36189415)
chr8 (137-231)||(33726110-33726202)
[»] chr1 (4 HSPs)
chr1 (138-242)||(39249864-39249967)
chr1 (137-242)||(2509111-2509215)
chr1 (137-239)||(34307138-34307239)
chr1 (137-242)||(46901735-46901839)
[»] chr2 (7 HSPs)
chr2 (137-242)||(33732656-33732759)
chr2 (137-242)||(44958200-44958304)
chr2 (137-242)||(16089909-16090011)
chr2 (137-242)||(37498863-37498969)
chr2 (159-242)||(14573082-14573165)
chr2 (139-242)||(3830900-3831001)
chr2 (132-204)||(36315686-36315757)
[»] chr6 (6 HSPs)
chr6 (132-241)||(15345655-15345762)
chr6 (137-242)||(3986906-3987009)
chr6 (137-241)||(3118047-3118150)
chr6 (137-242)||(13697655-13697758)
chr6 (137-242)||(24208531-24208634)
chr6 (137-242)||(14023021-14023124)
[»] scaffold0043 (1 HSPs)
scaffold0043 (137-212)||(87163-87236)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 3672465 - 3672361
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3672465 gaaaaagataggt-agataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  237 catctc 242  Q
    ||||||    
T  3672366 catctc 3672361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3445570 - 3445665
Alignment:
Q  1 ttggaagagaaaaatgagaagnnnnnnngtatggctgatatgataggaatcggttgtgattgtggggaataaattaaattattcttaattggtact 96  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445570 ttggaagagaaaaatgagaagaaaaaaagtatggctgatatgataggaatcggttgtgattgtggggaataaattaaattattcttaattggtact 3445665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6112820 - 6112717
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6112820 gaaaaagataggt-agacactctttttcatacacttcttatgtacactc-catgtattaggggtatttgagtaattttacatcatatcatcatccttttt 6112723  T
Q  237 catctc 242  Q
    ||||||    
T  6112722 catctc 6112717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 28093096 - 28093200
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  28093096 gaaaaagataggt-agacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcacccttttt 28093194  T
Q  237 catctc 242  Q
    ||||||    
T  28093195 catctc 28093200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 7217956 - 7217852
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||||||||||||| |||  ||||||| ||||||| ||||||||||||||| |||||||    
T  7217956 gaaaaagataggtaa-acaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttt 7217858  T
Q  237 catctc 242  Q
     |||||    
T  7217857 tatctc 7217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 44275896 - 44275793
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  44275896 gaaaaagatagat-agacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  237 catctc 242  Q
     |||||    
T  44275798 aatctc 44275793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 49244005 - 49243916
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatca 228  Q
    |||||||||| || ||||| | |||||||||||| |||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||    
T  49244005 gaaaaagatatgt-agacatcctttttcatacacctcttatgtacactc-catgtattaggggtattttagtaattttacatcatatcatca 49243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 21390956 - 21391040
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatat 223  Q
    ||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| ||||||||||    
T  21390956 gaaaaagataggt-agacaccctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttacatcatat 21391040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 35545102 - 35545013
Alignment:
Q  138 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggta-tttgagtaattatacatcatatcatca 228  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||| ||||||||| ||| ||||||| |||||||||||||||    
T  35545102 aaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaattttacatcatatcatca 35545013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 3445690 - 3445726
Alignment:
Q  99 ttgattagaatgcttaattccttttattatttttata 135  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3445690 ttgattagaatgcttaattccttttattaattttata 3445726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 46192550 - 46192484
Alignment:
Q  137 gaaaaagataggtcagacacc-ttttttcatacacttcttatgtacaccctcatgtattaggggtattt 204  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||| ||||||  ||||||||||    
T  46192550 gaaaaagataggt-agacacccttttttgatacacctcttatgtacaccc-catgtaccaggggtattt 46192484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 13347319 - 13347216
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  13347319 gaaaaagataggt-agacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  237 catct 241  Q
    |||||    
T  13347220 catct 13347216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 39371118 - 39371014
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39371118 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  237 catctc 242  Q
    ||||||    
T  39371019 catctc 39371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 2237467 - 2237363
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  2237467 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  237 catctc 242  Q
    ||||||    
T  2237368 catctc 2237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 9408054 - 9408143
Alignment:
Q  153 acaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 242  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  9408054 acaccatttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctc 9408143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 14831735 - 14831631
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  14831735 gaaaaagataggtaa-acaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcacccttttt 14831637  T
Q  237 catctc 242  Q
    ||||||    
T  14831636 catctc 14831631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 40887942 - 40888046
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||| || |||||||    
T  40887942 gaaaaagataggt-agacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccacccttttt 40888040  T
Q  237 catctc 242  Q
    ||||||    
T  40888041 catctc 40888046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 42683790 - 42683686
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||| | ||||| | |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| ||||||||||    
T  42683790 gaaaaagatagat-agacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatccttttt 42683692  T
Q  237 catctc 242  Q
    ||||||    
T  42683691 catctc 42683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 31800748 - 31800646
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    |||||||||||| |||||||| |||||||||||| |||| ||||||||| ||| | |||||||||||| ||||||| ||||||||||||||| || ||||    
T  31800748 gaaaaagatagg-cagacaccctttttcatacacctcttgtgtacaccc-catatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  237 catct 241  Q
    |||||    
T  31800650 catct 31800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 1815620 - 1815720
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||||||||||||| |      ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| || ||||    
T  1815620 gaaaaagataggt-agacaccttttttcataaagaa---atgtacaccct-atgtgttaggggtattttagtaattttacatcatatcatcacccctttt 1815714  T
Q  237 catctc 242  Q
    ||||||    
T  1815715 catctc 1815720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 27553387 - 27553477
Alignment:
Q  151 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 242  Q
    ||||||| |||||||||||| ||||||||||||||| |||| ||||| |||||| ||||||| ||||||| || |||| | |||||| ||||    
T  27553387 agacaccctttttcatacacctcttatgtacaccct-atgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctc 27553477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 22894849 - 22894767
Alignment:
Q  160 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894849 ttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 22894767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 48200876 - 48200772
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | |||||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  48200876 gaaaaagataggt-agacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatccttttt 48200778  T
Q  237 catctc 242  Q
    ||||||    
T  48200777 catctc 48200772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 36749596 - 36749493
Alignment:
Q  138 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    |||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  36749596 aaaaagataggt-agacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttc 36749498  T
Q  238 atctc 242  Q
    |||||    
T  36749497 atctc 36749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 34749898 - 34750002
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    |||||||||||  |||||| | |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34749898 gaaaaagatagc-cagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34749996  T
Q  237 catctc 242  Q
    ||||||    
T  34749997 catctc 34750002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 36370338 - 36370442
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||| ||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  36370338 gaaaaagataggt-agatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  237 catctc 242  Q
    ||||||    
T  36370437 catctc 36370442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 44000180 - 44000076
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  44000180 gaaaaagataggt-agacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcacccttttt 44000082  T
Q  237 catctc 242  Q
    ||||||    
T  44000081 catctc 44000076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 21559752 - 21559648
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||| | ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| | |||||||    
T  21559752 gaaaaagatagat-agacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  237 catctc 242  Q
    ||||||    
T  21559653 catctc 21559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 46111944 - 46112048
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| |||||||||||| | |||| |||| || |||||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  46111944 gaaaaagataggt-agacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  237 catctc 242  Q
    ||||||    
T  46112043 catctc 46112048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 51339784 - 51339887
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||  |||||| |||| ||||||| ||||||| ||||||||||||||| |||||||    
T  51339784 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaca-tcatgtgttagaggtattttagtaattttacatcatatcatcacccttttt 51339881  T
Q  237 catctc 242  Q
    ||||||    
T  51339882 catctc 51339887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 29472999 - 29472901
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||||||||||  |||||| |||||| ||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  29472999 gaaaaagataggt-agacatcctttttcatacaccacttatgcacaccc-catgtgttaggggtattttagtaattttacatcatatcatcatccctttt 29472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 30735496 - 30735594
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggta-tttgagtaattatacatcatatcatcatcctttt 235  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||| ||||||||| ||| |||||||  |||||||||||||| ||||||    
T  30735496 gaaaaagataggt-agacaccctttttcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 26972203 - 26972307
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  26972203 gaaaaagataggt-agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 26972301  T
Q  237 catctc 242  Q
    ||||||    
T  26972302 catctc 26972307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 34108617 - 34108513
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34108617 gaaaaagataggtaa-acaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 34108519  T
Q  237 catctc 242  Q
    ||||||    
T  34108518 catctc 34108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 36346565 - 36346668
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  36346565 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-ccttttt 36346662  T
Q  237 catctc 242  Q
    ||||||    
T  36346663 catctc 36346668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 30887890 - 30887787
Alignment:
Q  138 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    ||||||||| || ||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||| ||||||||||||||| ||||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccc-catgtattagaggtatttaagtaattttacatcatatcatcaccctttttc 30887792  T
Q  238 atctc 242  Q
    |||||    
T  30887791 atctc 30887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 28307495 - 28307599
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||| ||| | ||| |||||||| ||||||| ||||||||||||||| |||||||    
T  28307495 gaaaaagataggt-agacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcacccttttt 28307593  T
Q  237 catctc 242  Q
    ||||||    
T  28307594 catctc 28307599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 45782660 - 45782764
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  45782660 gaaaaagataggt-agacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 45782758  T
Q  237 catctc 242  Q
    ||||||    
T  45782759 catctc 45782764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 29953572 - 29953669
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttt 235  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| ||   |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  29953572 gaaaaagataggt-agacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccctttt 29953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 7699883 - 7699987
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7699883 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  237 catctc 242  Q
     |||||    
T  7699982 tatctc 7699987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 7700081 - 7700185
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700081 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  237 catctc 242  Q
     |||||    
T  7700180 tatctc 7700185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 7700279 - 7700383
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700279 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  237 catctc 242  Q
     |||||    
T  7700378 tatctc 7700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 7700477 - 7700581
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| | ||||| |||||||||||| |||||| |||||| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||    
T  7700477 gaaaaagataggtaa-acaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  237 catctc 242  Q
     |||||    
T  7700576 tatctc 7700581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 34828255 - 34828152
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||||||||||  |||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||||  ||||    
T  34828255 gaaaaagataggt-agacatcctttttcatacaccacttatgcacaccc-catatgttaggggtattttagtaattttacatcatatcatcatcactttt 34828158  T
Q  237 catctc 242  Q
    ||||||    
T  34828157 catctc 34828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 5811164 - 5811267
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || ||||    
T  5811164 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccctttt 5811261  T
Q  237 catctc 242  Q
    ||||||    
T  5811262 catctc 5811267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 31148480 - 31148377
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||  |||||||||||| ||||||  |||||| ||| | |||||  ||||| ||||||| ||||||||||||||| || ||||    
T  31148480 gaaaaagataggt-agacactctttttcatacacctcttatacacaccc-catatgttaggcttattttagtaattttacatcatatcatcacccatttt 31148383  T
Q  237 catctc 242  Q
    ||||||    
T  31148382 catctc 31148377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 21807324 - 21807426
Alignment:
Q  138 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    ||||||||||||  |||| | ||||| |||||||||| || ||||||| || || |||||||||||| |||||||  |||| | |||||||||| |||||    
T  21807324 aaaaagataggtt-gacaaccttttttatacacttctcatatacaccc-cacgtgttaggggtattttagtaatttcacataacatcatcatccattttc 21807421  T
Q  238 atctc 242  Q
    |||||    
T  21807422 atctc 21807426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 42220964 - 42221053
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggta-tttgagtaattatacatcatatcatca 228  Q
    ||||||||||||| ||||||||||| ||||||||  ||||||||||| | ||||| ||||||||| ||| |||||||  ||||||||||||||    
T  42220964 gaaaaagataggt-agacacctttt-tcatacaccacttatgtacactc-catgtgttaggggtatttttagtaatttaacatcatatcatca 42221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 13108337 - 13108264
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaatt 212  Q
    ||||||||||||| ||||||| ||||| |||||| | | ||||||||| |||||| |||||||||||| |||||||    
T  13108337 gaaaaagataggt-agacacccttttttatacacctttcatgtacacc-tcatgtgttaggggtattttagtaatt 13108264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 6909 - 6805
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||    
T  6909 gaaaaagataggt-agataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  237 catctc 242  Q
    ||||||    
T  6810 catctc 6805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 42162789 - 42162685
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  42162789 gaaaaagataggt-agacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  237 catctc 242  Q
    ||||||    
T  42162690 catctc 42162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 44081958 - 44081867
Alignment:
Q  151 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 242  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  44081958 agacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctc 44081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 31318996 - 31318892
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  31318996 gaaaaagataggt-agacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttttt 31318898  T
Q  237 catctc 242  Q
    ||||||    
T  31318897 catctc 31318892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 10203855 - 10203751
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| || |||||||    
T  10203855 gaaaaagataggt-agacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  237 catctc 242  Q
    ||||||    
T  10203756 catctc 10203751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 43186217 - 43186115
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||| | |||||    
T  43186217 gaaaaagataggt-agacatcatttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaattttatatcatatcatcacctttttt 43186120  T
Q  237 catct 241  Q
    |||||    
T  43186119 catct 43186115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 12665536 - 12665438
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | |||||| ||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  12665536 gaaaaagataggt-agacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 12665438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 18184743 - 18184640
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | |||||||||||| | ||||||||||| |||||| |||||||||||| ||||||| || |||||||||||| || ||||    
T  18184743 gaaaaagataggt-agacatcctttttcatacaccttttatgtacacc-tcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  237 catctc 242  Q
    ||||||    
T  18184645 catctc 18184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 30432516 - 30432426
Alignment:
Q  151 agacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 242  Q
    ||||||| |||||||||||| ||||||||||| || ||| ||||| |||||||| ||||||| ||||||||||||||| || ||||||||||    
T  30432516 agacaccctttttcatacacctcttatgtacatcc-catatattatgggtattttagtaattttacatcatatcatcaccccttttcatctc 30432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 36189415 - 36189303
Alignment:
Q  127 atttttatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcat 226  Q
    |||||| || ||||||||||||| ||||||| ||||||||||||  ||||||||||||  ||| | |||||||||||| | ||||| || ||||||||||    
T  36189415 atttttttaggaaaaagataggt-agacaccctttttcatacaccacttatgtacacc--catatgttaggggtattttaataattttatatcatatcat 36189319  T
Q  227 catcctttttcatctc 242  Q
    ||  | ||||||||||    
T  36189318 cactccttttcatctc 36189303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 33726202 - 33726110
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcc 231  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||  |||||| |||||||||||| |||||||  |||||| ||| ||||||    
T  33726202 gaaaaagataggt-agacacccttttttatacacctcccatgtacact-tcatgtgttaggggtattttagtaatttcacatcacatcgtcatcc 33726110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 39249864 - 39249967
Alignment:
Q  138 aaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 237  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||    
T  39249864 aaaaagataggt-agacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttc 39249962  T
Q  238 atctc 242  Q
    |||||    
T  39249963 atctc 39249967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 2509215 - 2509111
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| || |||||||    
T  2509215 gaaaaagataggt-agacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccacccttttt 2509117  T
Q  237 catctc 242  Q
    ||||||    
T  2509116 catctc 2509111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 34307138 - 34307239
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||| | ||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  34307138 gaaaaagataggt-agacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 34307236  T
Q  237 cat 239  Q
    |||    
T  34307237 cat 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 46901735 - 46901839
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||||||||| ||||||||||||||  ||||||| ||| |||||||||||||| ||||||||||||||| |||||||    
T  46901735 gaaaaagataggt-agacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcacccttttt 46901833  T
Q  237 catctc 242  Q
    ||||||    
T  46901834 catctc 46901839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 33732759 - 33732656
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| || |||||||    
T  33732759 gaaaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  237 catctc 242  Q
    ||||||    
T  33732661 catctc 33732656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 44958304 - 44958200
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||    
T  44958304 gaaaaagataggt-agacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44958206  T
Q  237 catctc 242  Q
     |||||    
T  44958205 tatctc 44958200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 16090011 - 16089909
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| || |||||||    
T  16090011 gaaaaagataggt-agacaccttttttcatacacctcttatgtacaccc-catgtgttaggggtattttagtaattttacatcatatcacca-ccttttt 16089915  T
Q  237 catctc 242  Q
     |||||    
T  16089914 tatctc 16089909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 37498863 - 37498969
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatc--cttt 234  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||||| || ||||| |||||||||||| ||||||| ||||||||||||||| |  ||||    
T  37498863 gaaaaagataggt-agacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctcttt 37498961  T
Q  235 ttcatctc 242  Q
    ||||||||    
T  37498962 ttcatctc 37498969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 14573165 - 14573082
Alignment:
Q  159 tttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 242  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctc 14573082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 3830900 - 3831001
Alignment:
Q  139 aaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttca 238  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| |||||||||| | ||||||| ||||||| || |||| |  ||||||    
T  3830900 aaaagataggt-agacaccctttttcatacacctcttatgtacaccc-catgtgttaggggtatattagtaattttacatcagataatcaccacttttca 3830997  T
Q  239 tctc 242  Q
    ||||    
T  3830998 tctc 3831001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 36315757 - 36315686
Alignment:
Q  132 tatacgaaaaagataggtcagaca-ccttttttcatacacttcttatgtacaccctcatgtattaggggtattt 204  Q
    |||| ||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||||| | ||||||||||    
T  36315757 tataggaaaaagataggt-agacatccttttttgatacacctcttatgtaca-cctcatgtgtcaggggtattt 36315686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 15345655 - 15345762
Alignment:
Q  132 tatacgaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcc 231  Q
    |||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  | |||||||||||| |     
T  15345655 tataggaaaaaaataggt-agacatcttttttcatacacttcttatgtacaccct-atgtattaggggcatttgagtaatttgatatcatatcatcacct 15345752  T
Q  232 tttttcatct 241  Q
    ||||||||||    
T  15345753 tttttcatct 15345762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 242
Target Start/End: Original strand, 3986906 - 3987009
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||||||||| || ||||||| |||| ||||||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  3986906 gaaaaagataggt-agacatcatttttcatacatttattatgtataccc-catgtattaagggtatttgagtaattttacatcatattatcatccctttt 3987003  T
Q  237 catctc 242  Q
    ||||||    
T  3987004 catctc 3987009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 3118047 - 3118150
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | |||||||||||  |||||||||||| | |||||||||||||||||| ||||||| |||||||| ||| || |||||||    
T  3118047 gaaaaagataggt-agacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttt 3118145  T
Q  237 catct 241  Q
     ||||    
T  3118146 tatct 3118150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 13697758 - 13697655
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||| | | ||||||||||| | ||||||||||||| ||||| |||| | ||||| ||||||| || |||||||||||| || ||||    
T  13697758 gaaaaagataggt-agagatcatttttcatacattacttatgtacaccc-catgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  237 catctc 242  Q
    ||||||    
T  13697660 catctc 13697655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 24208634 - 24208531
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||| | ||||| |||||| ||| || |||||| |||||| |||||||||||| |||||||  |||||| ||| ||| |||||||    
T  24208634 gaaaaagataggt-agacatccttttttatacacctctcatttacacc-tcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  237 catctc 242  Q
    ||||||    
T  24208536 catctc 24208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 242
Target Start/End: Complemental strand, 14023124 - 14023021
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatccttttt 236  Q
    ||||||||||||| ||||||| ||||| |||||| ||  ||||||||| |||||| |||||||||||| |||||||  |||||| ||| ||| || || |    
T  14023124 gaaaaagataggt-agacacccttttttatacacctcccatgtacacc-tcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgt 14023027  T
Q  237 catctc 242  Q
    ||||||    
T  14023026 catctc 14023021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 87163 - 87236
Alignment:
Q  137 gaaaaagataggtcagacaccttttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaatt 212  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||||||||| |||||||    
T  87163 gaaaaagataggt-agacaccttttttcatacaccttttatgtacaccc-catgtgttaggggtattttagtaatt 87236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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