View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_57 (Length: 241)
Name: NF17657_low_57
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 35399619 - 35399417
Alignment:
| Q |
24 |
gtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctatgacattcttgtacaatgcagctaactgaa |
123 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35399619 |
gtgtgtttgtattgcacattagggagcttggttgcaaattcaagttgttgttcactaacatctgtagcaatgacattcttgtacaatgcagctaactgaa |
35399520 |
T |
|
| Q |
124 |
atcatgaaatagtttttctttgagtaaaagtgannnnnnngaaaagaattgtattatgtgtatgcgcgtgtgtggaatttgacaaattataagaaacatt |
223 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35399519 |
atcatgaaatagtttttctttgagtaaaagtgatttttttgaaaagaattgtattatgtgtatgcgcgtgtgtgaaatttgacaaattataagaaacatt |
35399420 |
T |
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| Q |
224 |
cat |
226 |
Q |
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||| |
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| T |
35399419 |
cat |
35399417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 35404547 - 35404440
Alignment:
| Q |
24 |
gtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctatgacattcttgtacaatgcagctaactgaa |
123 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||| |
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| T |
35404547 |
gtgtgtttgtattgcacattagggagtttggttgcaaattcaagttgttgttcactcacatctgtggctatgacatttttgtacaatgtagctaactgaa |
35404448 |
T |
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| Q |
124 |
atcatgaa |
131 |
Q |
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|||||||| |
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| T |
35404447 |
atcatgaa |
35404440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 36209158 - 36209261
Alignment:
| Q |
24 |
gtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctatgacattcttgtacaatgcagctaactgaa |
123 |
Q |
| |
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||||||| |||| | |||||||| | ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| || | |||||||| |
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| T |
36209158 |
gtgtgttggtatcgtacattaggaagcttggttgcaaattcaagttgtttctcactagcatctgtggctatgacattcttgtacagtgtacttaactgaa |
36209257 |
T |
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| Q |
124 |
atca |
127 |
Q |
| |
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|||| |
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|
| T |
36209258 |
atca |
36209261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 36206196 - 36206299
Alignment:
| Q |
24 |
gtgtgtttgtattgcacattagggaacttggttgcaaattcaagttgttgttcactaacatctgtagctatgacattcttgtacaatgcagctaactgaa |
123 |
Q |
| |
|
||||||| |||| |||||||| | | | |||||||||||||||||||| |||||| |||| ||||||| ||||| |||||||||| ||||||||||| |
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| T |
36206196 |
gtgtgttggtatcgcacattatgaagcaaggttgcaaattcaagttgtttctcactagcatcggtagctactacattgttgtacaatgtagctaactgaa |
36206295 |
T |
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| Q |
124 |
atca |
127 |
Q |
| |
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|||| |
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|
| T |
36206296 |
atca |
36206299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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