View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_59 (Length: 237)
Name: NF17657_low_59
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_59 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 148525 - 148304
Alignment:
| Q |
2 |
gagaagaagagaggctaagtagtattcctggatcagaggaaaaatcattattaagttcataaattgctatcgcttttttccatttaaattctcctacaat |
101 |
Q |
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| T |
148525 |
gagaataagagaggctaagtagtatttctggatcagaggaaaaatcattattaagttaataaattactatcacttttttccatttaaattctcctacaat |
148426 |
T |
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| Q |
102 |
tgctgcaatacatctcatgtggaggttaatatcatcccctacttggatgaaatgtggcaatctaggagataataattctggttttttcataggtgaagtt |
201 |
Q |
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| T |
148425 |
tgctgcaatacatctcatgtggaggttaatatcatcccctacttggatgaaatgtggcaatctaggagataataattctggtttgttcataggtgaagtt |
148326 |
T |
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| Q |
202 |
agagatatgataggaatgttct |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
148325 |
agagatatgataggaatgttct |
148304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 139910 - 139733
Alignment:
| Q |
8 |
aagagaggctaagtagtattcctggatcagaggaaaaatcattattaagttcataaattgctatcgcttttttccatttaaattctcctacaattgctgc |
107 |
Q |
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|||||||||| |||||||| || ||||| |||| || ||||||||||||||||||||| || || | ||||||||| | |||||||||||||||||||| |
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| T |
139910 |
aagagaggcttagtagtatccccggatccgaggccaagtcattattaagttcataaattactgtcacctttttccatctgaattctcctacaattgctgc |
139811 |
T |
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| Q |
108 |
aatacatctcatgtggaggttaatatcatcccctacttggatgaaatgtggcaatctaggagataataattctggttt |
185 |
Q |
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| T |
139810 |
aatgcattgcatgtgaaggttaatatcatcccctactttaatgaaatgtggcaatcttggagataataattctggttt |
139733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 24897234 - 24897060
Alignment:
| Q |
9 |
agagaggctaagtagtattcctggatcagaggaaaaatc---attattaagttcataaattgctatcgcttttttccatttaaattctcctacaattgct |
105 |
Q |
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|||||| | ||||| |||| |||||||||||||||| || ||||||| ||||||||||| || || | ||||||||| | |||||||||||||||||| |
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| T |
24897234 |
agagagacaaagtattatttctggatcagaggaaaagtcgtcattattatgttcataaattactgtcacctttttccatctgaattctcctacaattgct |
24897135 |
T |
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| Q |
106 |
gcaatacatctcatgtggaggttaatatcatcccctacttggatgaaatgtggcaatctaggagataataattct |
180 |
Q |
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| T |
24897134 |
gcaatgcattggatgtgatggttaatatcatctcctaattggatgaaatgtggcaatctaggagataataattct |
24897060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 24909336 - 24909163
Alignment:
| Q |
10 |
gagaggctaagtagtattcctggatcagaggaaaaat---cattattaagttcataaattgctatcgcttttttccatttaaattctcctacaattgctg |
106 |
Q |
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| T |
24909336 |
gagaggctaagtattatttctggatcagaggaaaagtagtcattattatgttcataaattactgccacctttttccatctgaattctcctacaattgctg |
24909237 |
T |
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| Q |
107 |
caatacatctcatgtggaggttaatatcatcccctacttggatgaaatgtggcaatctaggagataataattct |
180 |
Q |
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| T |
24909236 |
caatgcattggatgtgatggttaatatcatctccgagttggatgaaatgtggcaatctaggagataataattct |
24909163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 24986839 - 24986666
Alignment:
| Q |
10 |
gagaggctaagtagtattcctggatcagaggaaaaatc---attattaagttcataaattgctatcgcttttttccatttaaattctcctacaattgctg |
106 |
Q |
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| T |
24986839 |
gagaggctaagtattatttctggatcagaggaaaagtcgtcattattatgttcataaattactgccacctttttccatctgaattctcctacaattgctg |
24986740 |
T |
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| Q |
107 |
caatacatctcatgtggaggttaatatcatcccctacttggatgaaatgtggcaatctaggagataataattct |
180 |
Q |
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|||| ||| ||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
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| T |
24986739 |
caatgcattggatgtgatggttaatatcatctctgagttggatgaaatgtggcaatctaggagataataattct |
24986666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 22876 - 22770
Alignment:
| Q |
74 |
cttttttccatttaaattctcctacaattgctgcaatacatctc-atgtgga-ggttaatatcatcccctacttggatgaaatgtggcaatctaggagat |
171 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||| |||| || ||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
22876 |
cttttttccatctgaattctcctacaattgctgcaatgcattgggatgttgatggttaatatcatctctgagttggatgaaatgtggcaatctaggagat |
22777 |
T |
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| Q |
172 |
aataatt |
178 |
Q |
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||||||| |
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| T |
22776 |
aataatt |
22770 |
T |
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