View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17657_low_62 (Length: 208)

Name: NF17657_low_62
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17657_low_62
NF17657_low_62
[»] chr6 (2 HSPs)
chr6 (65-188)||(6624081-6624205)
chr6 (17-50)||(28580061-28580094)
[»] chr7 (6 HSPs)
chr7 (66-162)||(5594098-5594194)
chr7 (66-162)||(5606718-5606814)
chr7 (66-129)||(5589137-5589200)
chr7 (17-50)||(48606032-48606065)
chr7 (17-49)||(9659805-9659837)
chr7 (11-43)||(46553903-46553935)
[»] chr8 (2 HSPs)
chr8 (17-50)||(42737120-42737153)
chr8 (11-43)||(16097179-16097211)
[»] chr5 (2 HSPs)
chr5 (17-50)||(34401786-34401819)
chr5 (17-50)||(37272301-37272334)
[»] chr3 (3 HSPs)
chr3 (17-50)||(38698388-38698421)
chr3 (17-50)||(40424444-40424477)
chr3 (17-50)||(51721303-51721336)
[»] chr1 (3 HSPs)
chr1 (17-50)||(29520650-29520683)
chr1 (17-50)||(35955915-35955948)
chr1 (17-50)||(36732160-36732193)
[»] chr4 (2 HSPs)
chr4 (17-47)||(35826047-35826077)
chr4 (17-49)||(13530829-13530861)
[»] chr2 (1 HSPs)
chr2 (17-50)||(2290834-2290867)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 6624205 - 6624081
Alignment:
Q  65 atgaaaatgttacaacatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgtcgtcccctcctatccttcat 164  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6624205 atgaaaatgttgcaacatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgttgtcccctcctatccttcat 6624106  T
Q  165 tgtgtc-catgctttttcagcagca 188  Q
    |||||| ||||||||||||||||||    
T  6624105 tgtgtcacatgctttttcagcagca 6624081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 28580061 - 28580094
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  28580061 gaatataacattaattcatgatatttgtgtagaa 28580094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 5594098 - 5594194
Alignment:
Q  66 tgaaaatgttacaacatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgtcgtcccctcctatccttc 162  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||| ||||||||||||||| |||||||||||    
T  5594098 tgaaaatgtgacaacatttggtttaatgttcagctcatgcattttttggaagagccacaatatgcagtgttggtcttgtcgtcccttcctatccttc 5594194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 5606814 - 5606718
Alignment:
Q  66 tgaaaatgttacaacatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgtcgtcccctcctatccttc 162  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||| | |||||||||||| || |||| ||||    
T  5606814 tgaaaatgtgacaacatttggtttaatgttcagctcatgcattttttggaagagccacaatatgcagtgtttgtcttgtcgtccacttctattcttc 5606718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 5589137 - 5589200
Alignment:
Q  66 tgaaaatgttacaacatttggtttaatgtgcagctcatacattttctggaagagccacgatatg 129  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| |||||||||||| |||||    
T  5589137 tgaaaatgtgacaacatttggtttaatgttcagctcatgcattttttggaagagccacaatatg 5589200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 48606065 - 48606032
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  48606065 gaatataacattaattcatgatatttgtgtagaa 48606032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9659837 - 9659805
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtaga 49  Q
    ||||||||||||||||||||||| |||||||||    
T  9659837 gaatataacattaattcatgatacttgtgtaga 9659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 46553935 - 46553903
Alignment:
Q  11 tgagaagaatataacattaattcatgatatttg 43  Q
    ||||| |||||||||||||||||||||||||||    
T  46553935 tgagatgaatataacattaattcatgatatttg 46553903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 42737120 - 42737153
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  42737120 gaatataacattaattcatgatatttgtgtagaa 42737153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 16097179 - 16097211
Alignment:
Q  11 tgagaagaatataacattaattcatgatatttg 43  Q
    ||||| |||||||||||||||||||||||||||    
T  16097179 tgagatgaatataacattaattcatgatatttg 16097211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 34401786 - 34401819
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  34401786 gaatataacattaattcatgatatttgtgtagaa 34401819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 37272301 - 37272334
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  37272301 gaatataacattaattcatgatatttgtgtagaa 37272334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 38698388 - 38698421
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  38698388 gaatataacattaattcatgatatttgtgtagaa 38698421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 40424444 - 40424477
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  40424444 gaatataacattaattcatgatatttgtgtagaa 40424477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 51721336 - 51721303
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  51721336 gaatataacattaattcatgatatttgtgtagaa 51721303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 29520683 - 29520650
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  29520683 gaatataacattaattcatgatatttgtgtagaa 29520650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 35955915 - 35955948
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  35955915 gaatataacattaattcatgatatttgtgtagaa 35955948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 36732160 - 36732193
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    ||||||||||||||||||||||||||||||||||    
T  36732160 gaatataacattaattcatgatatttgtgtagaa 36732193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 35826047 - 35826077
Alignment:
Q  17 gaatataacattaattcatgatatttgtgta 47  Q
    |||||||||||||||||||||||||||||||    
T  35826047 gaatataacattaattcatgatatttgtgta 35826077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 13530861 - 13530829
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtaga 49  Q
    ||||||||||||||||||||||| |||||||||    
T  13530861 gaatataacattaattcatgatacttgtgtaga 13530829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 2290867 - 2290834
Alignment:
Q  17 gaatataacattaattcatgatatttgtgtagaa 50  Q
    |||||||||||||||| |||||||||||||||||    
T  2290867 gaatataacattaatttatgatatttgtgtagaa 2290834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University