View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_8 (Length: 489)
Name: NF17657_low_8
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 32550365 - 32550840
Alignment:
| Q |
1 |
tattttctaaaaattggaacatttttatatccgtagacgaaattgacctcacaaaactcacacacacaaagttcccagtttgaatatcagcattgtcgga |
100 |
Q |
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| T |
32550365 |
tattttctaaaaattggaacatttttatatccgtagacgaaattgacctcacaaaactcacacacacaaagttcccagtttgaatatcagcattgtcgga |
32550464 |
T |
|
| Q |
101 |
agnnnnnnnnn-ttgtaatatattgtgatagtcaaaaactatgaaccgaaacaagtgatttgatgattgttgaagtgcagaaaagcacaaacctcgatac |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32550465 |
agaaaaaaaaaattgtaatatattgtgatagtcaaaaactatgaaccgaaacaagtgatttggtgattgttgaagtgcagaaaagcacaaacctcgatac |
32550564 |
T |
|
| Q |
200 |
gagtaatggtgaaaatggcatgagcagtgttcttataactgggaagatgagaggctcgaccatcgttaactgcgaatcaagcaatgcttc-nnnnnnntt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32550565 |
gagtaatggtgaaaatggcatgagcagtgttcttataactgggaagatgagaggctcgaccatcgttaactgcgaatcaagcaatgcttcaaaaaaaatt |
32550664 |
T |
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| Q |
299 |
gaatagaaggtaggggaaatatggaagnnnnnnnttgatcgatatgagaaagagtgagagaaccttgaaacctagttcggacaacgtcgaggggatgcat |
398 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550665 |
gaatagaaggtaggggaaatatggaagaaaaaaattgatcgatatgagaaagagtgagagaaccttgaaacctagttcggacaacgtcgaggggatgcat |
32550764 |
T |
|
| Q |
399 |
gacggcgacggtggcgaatccagcggcggcgccggcagtggcgttctcccatcgccactgcttggaaggttccgtt |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32550765 |
gacggcgacggtggcgaatccagcggcggcgccggcagtggcgttctcccattgccactgcttggaaggttccgtt |
32550840 |
T |
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