View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17657_low_9 (Length: 468)
Name: NF17657_low_9
Description: NF17657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17657_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 125 - 458
Target Start/End: Complemental strand, 33456765 - 33456426
Alignment:
| Q |
125 |
ttgatttgaattagggtttgataattgtctactaaatttattcttcttgaattgaccccttccaacactacaaaactcttccaacaattcttgagcagct |
224 |
Q |
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| T |
33456765 |
ttgatttgaattagggtttgataattgtctactaaatttattcttcttgaattgaccccttccaacactgcaaaactcttccaacaattcttgagcagct |
33456666 |
T |
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| Q |
225 |
ttaacatattttgaattcctcaacacattaacaacacctaaagaagaagaaga------tgaaccaaatccaacatgtccttgatgaatatgattaatct |
318 |
Q |
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| T |
33456665 |
ttaacatattttgaattcctcaacacattaacaacacctaaagaagaagaagaagaagatgaaccaaatccaacatgtccttgatgaatatgattaatct |
33456566 |
T |
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| Q |
319 |
gtcctaatccacctccttgtaaatgatgatgatgaacactaccaagattcttgtaagaagttcctggtcctccttgattgtaatatagaaaaccaccagc |
418 |
Q |
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| T |
33456565 |
gtcctaatccacctccttgtaaatgatgatgatgaacactaccaagattcttgtaagaagttcctggtcctccttgattgtaatatagaaaaccaccagc |
33456466 |
T |
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| Q |
419 |
agcagcatctcccattcttaaatcctctgaatgatgatgt |
458 |
Q |
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| T |
33456465 |
agcagcatctcccattcttaaatcctctgaatgatgatgt |
33456426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 33456870 - 33456800
Alignment:
| Q |
20 |
cttccttctttgatgctcaatcctatcagcaggtgacaaaggtgaaacatcttttgaagaagatgaagaag |
90 |
Q |
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| T |
33456870 |
cttccttctttgatgctcaatcctatcagcaggtgacaaaggtgaaacatcttttgaagaagatgaagaag |
33456800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 7066150 - 7066191
Alignment:
| Q |
20 |
cttccttctttgatgctcaatcctatcagcaggtgacaaagg |
61 |
Q |
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| T |
7066150 |
cttccttctttgatgttcaatcctatcagcagctgacaaagg |
7066191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 7066304 - 7066368
Alignment:
| Q |
177 |
tgaccccttccaacactacaaaactcttccaacaattcttgagcagctttaacatattttgaatt |
241 |
Q |
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| T |
7066304 |
tgaccccttccaacactgcaaaactcttgaagcaattcttgagtaggtttcatatattttgaatt |
7066368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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