View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17658_high_1 (Length: 535)
Name: NF17658_high_1
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 22790449 - 22790173
Alignment:
| Q |
14 |
ataattctcaacatgcattattaaaaatcatgtggtgcattctaaattcnnnnnnnntata--aaattagatgttaagaatatctcatgtgaaaattgta |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22790449 |
ataattttcaacatgcattattaaaaatcatgtggtgcattctaaattaaaaaaaaatatataaaattagatgttaagaatatctcatgtgaaaattgta |
22790350 |
T |
|
| Q |
112 |
gcaccatccttgatttcaatatcttcacagtgtgcattccaaatgaaaagatactattaggtgactattcaaggtggttgtacaaagaaatcctcgaaat |
211 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
|
|
| T |
22790349 |
gcacaacccttgatttcaatatcttcacagtgtgcattccaaatgaaaagatactattaggtgacaattcaaggtagttgtacaaagaaatccttgaaat |
22790250 |
T |
|
| Q |
212 |
aacgtctgaaagtgtaatttgaattaatcatttactctttttagttccaaactgaattctatgtttcttagatgata |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22790249 |
aacgtctgaaagtgtaatttgaattaatcatttactctttttagttccaaactgaattctatgtttcttagatgata |
22790173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 432 - 519
Target Start/End: Complemental strand, 22789952 - 22789865
Alignment:
| Q |
432 |
tttagtacctaccttttatttgcaccaacattcaagtagattgcaatcaagaattttatccttgggacatggtatgcgttgaaaaaac |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22789952 |
tttagtacctaccttttatttgcaccaacattcaagtagattgcaatcaagaattttatccttgggacatggtatgcgttgaaaaaac |
22789865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 516
Target Start/End: Complemental strand, 22816084 - 22816003
Alignment:
| Q |
435 |
agtacctaccttttatttgcaccaacattcaagtagattgcaatcaagaattttatccttgggacatggtatgcgttgaaaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || | |||| ||| ||| ||||| |||||| ||||||||||||||| |
|
|
| T |
22816084 |
agtacctaccttttatttgcaccaacattcaatttgactacaataaaggttttgatcctcgggacaaggtatgcgttgaaaa |
22816003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 22817048 - 22817010
Alignment:
| Q |
17 |
attctcaacatgcattattaaaaatcatgtggtgcattc |
55 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22817048 |
attctcaacatgcattattgaaaatcatgtggtgcattc |
22817010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 22790062 - 22790025
Alignment:
| Q |
322 |
aaataagttgaagggtcagagaaatatatggatttgtg |
359 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22790062 |
aaataagttgaagggtcagagaaataaatggatttgtg |
22790025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University