View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17658_high_2 (Length: 494)
Name: NF17658_high_2
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 22 - 486
Target Start/End: Original strand, 45460454 - 45460918
Alignment:
| Q |
22 |
catttctcttggtgttaattaatgnnnnnnncttgagttattaatcaagagagtagctcccatttttgcattaaactagaaaatgaagagaagtcttnnn |
121 |
Q |
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| T |
45460454 |
catttctcttggtgttaattaatgtttttttcttgagttattaatcaagagagtagctcccatttttgcattaaactagaaaatgaagggaagtcttaaa |
45460553 |
T |
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| Q |
122 |
nnnntgaaaacttggtaaactaaacagggaatgcagataaaagaattgatgtttaatatatactaccagcacaggcacagtgcagttatgtccgaaccac |
221 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45460554 |
aaaatgaaaagttggtaaactaaacagggaatgcagataaaagaattgatgtttaatatatactaccagcacaggcacagtgcagttatgtccgaaccac |
45460653 |
T |
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| Q |
222 |
agtacttttgatttgattaaattaaggatggttatatggaacttgtttaccattcagttagcatgattgtttgttaatgacattaaaatcataatagtgt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45460654 |
agtacttttgatttgattaaattaaggatggttatatggaacttgtttaccattcagttagcatgatcgtttgttaatgacattaaaatcataatagtgt |
45460753 |
T |
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| Q |
322 |
aattaattaagttcacaatttgtggcaggtttggctataatatgtggaatgcttgtgacaactagtctcatgtcactaatcattgctttgtattgggaga |
421 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45460754 |
aattaattaagttcacaatttgtggtaggtttggctataatatgtggaatgcttgtgacaactagtctcatgtcactaatcattgctttgtattgggaga |
45460853 |
T |
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| Q |
422 |
agaatttgatgatatccgcatgctttctgttatgttttggcctcgttgaggttgcatattcttcg |
486 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45460854 |
agaatttgatgatatctgcatgctttctgttatgttttggcctcgttgaggttgcatatttttcg |
45460918 |
T |
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