View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17658_high_6 (Length: 294)
Name: NF17658_high_6
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 32823330 - 32823473
Alignment:
| Q |
96 |
ttccttcttcaacccttaagtgaaggtatccaaacttgatgcataataagaacgtgtgtggttatattttgcagatgaatttataatgtatggttctaat |
195 |
Q |
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| T |
32823330 |
ttccttcttcaacccttaggggaaggtatccaaacttgatgcataataagaacttgtgtggttatattttgcagatgaatttataatgtatgattctaat |
32823429 |
T |
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| Q |
196 |
atatggttctaacttctaagaatttataaatacattgttaagtt |
239 |
Q |
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| T |
32823430 |
atatggttctaacttctaagaatttataaatacattgttaagtt |
32823473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 32823280 - 32823329
Alignment:
| Q |
17 |
ttcatatctacattgtgtttgaat-agtacactttttgacttattattat |
65 |
Q |
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| T |
32823280 |
ttcacatctacattgtgtttgaatgagtacactttttgactgattattat |
32823329 |
T |
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