View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17658_low_10 (Length: 249)
Name: NF17658_low_10
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 13888269 - 13888476
Alignment:
| Q |
15 |
caagcctccattgaacacgtccaattatcaagcttgggcacgtgctatgcgtagaggtcttggtggcaagaataagtttcagtttgtagatggaaccatt |
114 |
Q |
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| T |
13888269 |
caagcctcagttgaacacgtccaattatcaagcttgggcgcgtgctatgcgtagaggtcttggtggcaagaacaaatatcagtttgtagatggaacaatt |
13888368 |
T |
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| Q |
115 |
gatcctcctacacctgatgatttgaatttttctgcttagaagagatgcaataatgtcatccattcttggatcatgaattctgtttctgattcaattgcac |
214 |
Q |
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| T |
13888369 |
cctcctcctacatttgatgatttgaatttttctgcatgggaaagatgcaataatctcattcactcctagattatgaactctgtttatgataatattgcac |
13888468 |
T |
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| Q |
215 |
atagtatt |
222 |
Q |
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| T |
13888469 |
agagtatt |
13888476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11021315 - 11021246
Alignment:
| Q |
1 |
cattctgtgacaaccaagcctccattgaacacgtccaattatcaagcttgggcacgtgctatgcgtagag |
70 |
Q |
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| T |
11021315 |
cattctgtgacaaccaagcctccattgaacacgtccaattatcaagcttgggcacgtgctatgcgtagag |
11021246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 11021249 - 11021170
Alignment:
| Q |
155 |
agagatgcaataatgtcatccattcttggatcatgaattctgtttctgattcaattgcacatagtattctatacattgat |
234 |
Q |
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| T |
11021249 |
agagatgcaataatgtcatccatacttggatcatgaattatgtttctgattcaactgcacatagtattctatacattgat |
11021170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 15095300 - 15095355
Alignment:
| Q |
26 |
tgaacacgtccaattatcaagcttgggcacgtgctatgcgtagaggtcttggtggc |
81 |
Q |
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| T |
15095300 |
tgaacacgtccaattatcaagcttgggcacgtgctatgcgcagaggtcttggtggc |
15095355 |
T |
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