View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17658_low_3 (Length: 432)

Name: NF17658_low_3
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17658_low_3
NF17658_low_3
[»] chr3 (10 HSPs)
chr3 (18-421)||(28706270-28706673)
chr3 (18-272)||(13417487-13417742)
chr3 (18-174)||(30047481-30047636)
chr3 (295-395)||(13417332-13417431)
chr3 (269-393)||(30047746-30047870)
chr3 (269-393)||(18726281-18726405)
chr3 (205-272)||(30047648-30047715)
chr3 (192-254)||(27367630-27367692)
chr3 (276-393)||(27367472-27367589)
chr3 (269-393)||(27338603-27338727)
[»] chr4 (3 HSPs)
chr4 (25-273)||(9008944-9009191)
chr4 (143-272)||(53471176-53471305)
chr4 (275-393)||(53471021-53471139)
[»] chr1 (2 HSPs)
chr1 (19-272)||(24273915-24274167)
chr1 (269-393)||(24274196-24274320)
[»] scaffold0043 (1 HSPs)
scaffold0043 (270-393)||(79430-79553)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 28706270 - 28706673
Alignment:
Q  18 agttagacatgttccacacatgacgaagaatctgatatctttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtt 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28706270 agttagacatgttccacacatgacgaagaatctgatatttttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtt 28706369  T
Q  118 tgcaagggttcaagtgtgattcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28706370 tgcaagggttcaagtgtgattcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctcc 28706469  T
Q  218 aagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatgatattctttatgggcataagatgaaggatcttgagttttgtaaaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28706470 aagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatgatattctttatgggcataagatgaaggatcttgagttttgtaaaca 28706569  T
Q  318 ctgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaagggcacactagattccatcaaagcacctcttatttcttaccct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28706570 ctgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaagggcacactagattccatcaaagcacctcttatttcttaccct 28706669  T
Q  418 tcat 421  Q
    ||||    
T  28706670 tcat 28706673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 13417742 - 13417487
Alignment:
Q  18 agttagacatgttccacacatgacgaagaatctgatatctttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctg--gagttatacatg 115  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||  ||||||||||||    
T  13417742 agttagacctgttccacacatgacgaagaatcagatatctctgagtcttttggacaagaaggggtttagtttcaaaagtgaaggtggagagttatacatg 13417643  T
Q  116 tttgcaagggttcaagtgtgattcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcct 215  Q
    |||||||||||||||  ||||||  | ||||||||||| ||  ||||||| ||||||||||||||||| |||||| ||| ||  | || |||||||||||    
T  13417642 tttgcaagggttcaaccgtgattttg-aaaggtgtgaaacgatgtactctctactttctacaaggtactacactatctgcttaagttgttgttgcttcct 13417544  T
Q  216 ccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 272  Q
    || ||||||||||  |||||||||||| ||||||||||| |||||||| ||||||||    
T  13417543 ccgagattgaccataaagatatgacgaggttgtggcatatgaggcttgggcatatga 13417487  T

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Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 30047481 - 30047636
Alignment:
Q  18 agttagacatgttccacacatgacgaagaatctgatatctttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtt 117  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |    
T  30047481 agttagacatgttccacacatgacgaagaatcagatatctctgagtcttttggacaagaagaggtttagtttcaaaggtgaaggtggagttatatatgct 30047580  T
Q  118 tgcaagggttcaagtgtgattcagaaaaggtgtgaagcggggtactctatactttct 174  Q
    |||||||||||||||||||||  | |||| ||||||||| |||||||||||||||||    
T  30047581 tgcaagggttcaagtgtgattttg-aaagttgtgaagcgaggtactctatactttct 30047636  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 13417431 - 13417332
Alignment:
Q  295 aaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaagggcacactagattccatca 394  Q
    |||||||||| ||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13417431 aaggatcttgggttctgtgaacactgtgtttttgggaaactacatcgcaataagtttccaaaagcgattcatag-acaaagggcacactagattacatca 13417333  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 393
Target Start/End: Original strand, 30047746 - 30047870
Alignment:
Q  269 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 368  Q
    ||||| || ||| |||||| || || || ||||||| ||| ||| || ||||||||| ||||||||||||||| || |||||||||||||||| ||||||    
T  30047746 atgatcttatttgtgggcacaaaataaatgatcttgggttctgtgaaaactgtgtttttgggaaactacatcgaaataagtttccaaaagcgaatcatag 30047845  T
Q  369 aacaaagggcacactagattccatc 393  Q
    |||||||||||||||||||| ||||    
T  30047846 aacaaagggcacactagattacatc 30047870  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 393
Target Start/End: Original strand, 18726281 - 18726405
Alignment:
Q  269 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 368  Q
    ||||| |||||| |||||| ||||| |||||| ||| ||| ||| |||| |||| || || ||||||  |||||||||||||||| ||||| |||||  |    
T  18726281 atgatcttctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaacaagtttcctaaagcaattcaatg 18726380  T
Q  369 aacaaagggcacactagattccatc 393  Q
    ||| || ||||||||||||| ||||    
T  18726381 aacgaatggcacactagattacatc 18726405  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 30047648 - 30047715
Alignment:
Q  205 tgttgcttcctccaagattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 272  Q
    ||||||||||||| |||||||| ||||||| |||| |||||||||||||| ||||||||  |||||||    
T  30047648 tgttgcttcctccgagattgactaagaagaaatgaagaagttgtggcatatgaggcttggacatatga 30047715  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 27367692 - 27367630
Alignment:
Q  192 ctgattctgctgctgttgcttcctccaagattgaccaagaagatatgacgaagttgtggcata 254  Q
    ||||||||| || ||||||||||||| | |||||||||||||||||||| || ||||||||||    
T  27367692 ctgattctgttgttgttgcttcctccgaaattgaccaagaagatatgacaaaattgtggcata 27367630  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 393
Target Start/End: Complemental strand, 27367589 - 27367472
Alignment:
Q  276 tctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaag 375  Q
    ||||| |||||| ||||| |||||| ||| ||| ||| |||| |||| || || ||||||  |||||||||||||||| ||||| |||||  |||| ||     
T  27367589 tctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaacaagtttcctaaagcaattcaatgaacgaaa 27367490  T
Q  376 ggcacactagattccatc 393  Q
    ||||||||||||| ||||    
T  27367489 ggcacactagattacatc 27367472  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 27338727 - 27338603
Alignment:
Q  269 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 368  Q
    ||||| |||||| || ||| ||||| |||||| ||| ||| ||| |||| |||  || || ||||||  |||||||||||||||| ||||| |||||  |    
T  27338727 atgatcttctttgtgagcacaagataaaggattttgggttctgtgaacattgtaattttgagaaactttatcgcaacaagtttcctaaagcaattcaacg 27338628  T
Q  369 aacaaagggcacactagattccatc 393  Q
    ||| ||||| |||||||||| ||||    
T  27338627 aacgaagggaacactagattacatc 27338603  T

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Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 9009191 - 9008944
Alignment:
Q  25 catgttccacacatgacgaagaatctgatatctttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtttgcaagg 124  Q
    |||||| |||||||| | |||||||||||||||  |||||||||||||||||  ||||| ||||| |||||||||| |||||||||||||||||||||||    
T  9009191 catgtttcacacatgtccaagaatctgatatctccgagtcttttggacaagacagggttcagtttgaaaggtgaagatggagttatacatgtttgcaagg 9009092  T
Q  125 gttcaagtgtgattcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctccaagattg 224  Q
    |||||||||||||||  |||||||| |||||| |||||||| || |||||||||||||  |||||| |||||| || ||||||| |||||| | | ||||    
T  9009091 gttcaagtgtgattc-taaaaggtgagaagcgaggtactctttaatttctacaaggtattacactatctgattatgttgctgtttcttccttcgatattg 9008993  T
Q  225 accaagaagatatgacgaagttgtggcataagaggcttgcgcatatgat 273  Q
    || ||||||||||||||||||||||||||| |||||||| |||||||||    
T  9008992 actaagaagatatgacgaagttgtggcatatgaggcttgggcatatgat 9008944  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 53471305 - 53471176
Alignment:
Q  143 aaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctccaagattgaccaagaagatatgacga 242  Q
    |||||||||||| |||||||||| ||||||||||||||||| || |||||||||| || || ||||||||||| | ||||||||||||||||||||||||    
T  53471305 aaaggtgtgaagaggggtactctgtactttctacaaggtactacgctaactgattatggtgttgttgcttccttcgagattgaccaagaagatatgacga 53471206  T
Q  243 agttgtggcataagaggcttgcgcatatga 272  Q
    | |||||||||| |||||||| ||||||||    
T  53471205 aattgtggcatatgaggcttgggcatatga 53471176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 393
Target Start/End: Complemental strand, 53471139 - 53471021
Alignment:
Q  275 ttctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatagaacaaa 374  Q
    |||||||||| || ||||| ||||||| || ||| | | |||||| || || |||||||| ||||||||| ||||||| ||||| |||||||||||||||    
T  53471139 ttctttatggacacaagataaaggatcctgggttatctgaacactatgcttttgggaaacgacatcgcaataagtttctaaaagtgattcatagaacaaa 53471040  T
Q  375 gggcacactagattccatc 393  Q
    |||||||||||||| ||||    
T  53471039 gggcacactagattacatc 53471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 24273915 - 24274167
Alignment:
Q  19 gttagacatgttccacacatgacgaagaatctgatatctttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgttt 118  Q
    |||||||||||||||||| | ||||| ||| | ||||||||||||||| |||||||||||||||||||||| ||| |||||| ||||| ||||||| |||    
T  24273915 gttagacatgttccacacgtaacgaataatattatatctttgagtcttctggacaagaaggggtttagttttaaaagtgaaggtggagctatacatattt 24274014  T
Q  119 gcaagggttcaagtgtgattcagaaaaggtgtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctcca 218  Q
     |||||||||||||||||||| | ||||||||||||| | ||||| | |||||| |||||||||| ||  || |||||  || || ||||||||||||      
T  24274015 tcaagggttcaagtgtgattctg-aaaggtgtgaagcagagtactttgtactttttacaaggtactacgttatctgatattgttgttgttgcttcctctg 24274113  T
Q  219 agattgaccaagaagatatgacgaagttgtggcataagaggcttgcgcatatga 272  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  24274114 agattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatga 24274167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 393
Target Start/End: Original strand, 24274196 - 24274320
Alignment:
Q  269 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcatag 368  Q
    |||||||||||| |||||||||||| || ||||||| |||  || |||||||||||| |||| |||||||||||||||| ||||| ||||  ||||||||    
T  24274196 atgatattctttgtgggcataagataaaagatcttgggttccgtgaacactgtgtttttgggtaactacatcgcaacaaatttcctaaagtaattcatag 24274295  T
Q  369 aacaaagggcacactagattccatc 393  Q
    |||||||| |||| |||||| ||||    
T  24274296 aacaaaggacacaatagattacatc 24274320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 393
Target Start/End: Original strand, 79430 - 79553
Alignment:
Q  270 tgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaagcgattcataga 369  Q
    |||| |||||| |||||| ||||| |||||| ||  ||| | | |||| |||| || || ||||||  |||||||||||||||| ||||| |||||  ||    
T  79430 tgatcttctttgtgggcacaagataaaggattttaggttctctgaacattgtgattttgagaaactttatcgcaacaagtttcctaaagcaattcaatga 79529  T
Q  370 acaaagggcacactagattccatc 393  Q
    || ||| |||||||||||| ||||    
T  79530 acgaagagcacactagattacatc 79553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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