View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17658_low_4 (Length: 374)
Name: NF17658_low_4
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 5815857 - 5816210
Alignment:
| Q |
1 |
tttaaattgggagtaaagtaaacatatgcaataaagtgaatggaaaggaaaacatggatcaaactagcata-ttggttccttcataactctacaaaatag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5815857 |
tttaaattgggagtaaagtaaacatatgcaataaagtgaatggaaaggaaaacatggatcaaactagcataattggttccttcataactctacaaaatag |
5815956 |
T |
|
| Q |
100 |
agtagtctacatgagacataaaaataaggtaaatcaatgtttactatactcagccaatagaatgccactgttgggacactcctgcaatgactttgccatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5815957 |
agtagtctacatgagacataaaaataaggtaaatcaatgtttactatactcagccaatagaatgccactgttgggacactcctgcaatgactttgccatc |
5816056 |
T |
|
| Q |
200 |
aaataatcagcttctttcttaaatccattccttaattccgctctaacagctgctagccagagttcaggattttgaggattcttctttcgagcaattgtga |
299 |
Q |
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| T |
5816057 |
aaataatcagcttctttcttacatccatgccttaattccgctctaacagctgctagccagagttcaggattttgaggattcttctttcgagcaattgtga |
5816156 |
T |
|
| Q |
300 |
gaacagcacgaactttactgaactcatcactcatctcctcttcaatattagcaa |
353 |
Q |
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| T |
5816157 |
gaacagcacgaactttactgaactcatcactcatctcctcttcaatattagcaa |
5816210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 150 - 353
Target Start/End: Original strand, 25164431 - 25164631
Alignment:
| Q |
150 |
cagccaatagaatgccactgttgggacactcctgcaatgactttgccatcaaataatcagcttctttcttaaatccattccttaattccgctctaacagc |
249 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| | |||| | ||||||| ||||||||||| |
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| T |
25164431 |
cagcccatagaatgccactgttgggacactcctgcaatgcttttgccatcaaaatatcagcttctttcttataaccatgctttaattctgctctaacagc |
25164530 |
T |
|
| Q |
250 |
tgctagccagagttcaggattttgaggattcttctttcgagcaattgtgagaacagcacgaactttactgaactcatcactcatctcctcttcaatatta |
349 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||| ||||||||| | |||||| ||||||| | | |||||||||||||||| | |||| |
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| T |
25164531 |
tgctagccagagttcagggttttgaggattcctctttcgagccattgtgagagctgcacgagctttactcagc---ccactcatctcctcttcgagatta |
25164627 |
T |
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| Q |
350 |
gcaa |
353 |
Q |
| |
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|||| |
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| T |
25164628 |
gcaa |
25164631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 25163839 - 25163891
Alignment:
| Q |
42 |
ggaaaggaaaacatggatcaaactagcatattggttccttcataactctacaa |
94 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
25163839 |
ggaaaggagaacatggatcaaactagcatacaagttccatcataactccacaa |
25163891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 156 - 353
Target Start/End: Original strand, 2188818 - 2189012
Alignment:
| Q |
156 |
atagaatgccactgttgggacactcctgcaatgactttgccatcaaataatcagcttctttcttaaatccattccttaattccgctctaacagctgctag |
255 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| | ||||||| ||||||| ||||||||| |
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| T |
2188818 |
atagaattccactgttgggacactcctgcaatgcttttgccatcaacgtatcagcttctttcttgtatccatgctttaattctgctctaatagctgctag |
2188917 |
T |
|
| Q |
256 |
ccagagttcaggattttgaggattcttctttcgagcaattgtgagaacagcacgaactttactgaactcatcactcatctcctcttcaatattagcaa |
353 |
Q |
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||||||||| || ||||||||||||||||| ||||| ||||||| || ||||||||||||| | | ||| ||||||||||||||| |||||||| |
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| T |
2188918 |
ccagagttcggggttttgaggattcttcttgcgagccattgtgaaaattacacgaactttactcagcccat---tcatctcctcttcaagattagcaa |
2189012 |
T |
|
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