View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17658_low_7 (Length: 272)
Name: NF17658_low_7
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_low_7 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 27273638 - 27273373
Alignment:
| Q |
1 |
agcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttga |
100 |
Q |
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| T |
27273638 |
agcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttga |
27273539 |
T |
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| Q |
101 |
ttcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcga---cgaagtagagttctttgtattttagtttcagtt |
197 |
Q |
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| T |
27273538 |
ttattgcaattctcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcaacatcgaagtagagttctttgtattttagttttagtt |
27273439 |
T |
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| Q |
198 |
aacaacatggcgtcgaactctataatgatataccgatgtaactctttttctttgctttcttcttct |
263 |
Q |
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| T |
27273438 |
aacaacatgacgtcgcactctataatgatataccgatgtaattctttttctttgctttcttcttct |
27273373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 542 - 290
Alignment:
| Q |
1 |
agcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttga |
100 |
Q |
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| T |
542 |
agcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaatataaggtgttttgactagatttaatttga |
443 |
T |
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| Q |
101 |
ttcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcga---cgaagtagagttctttgtattttagtttcagtt |
197 |
Q |
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| T |
442 |
ttattgcaattttcaaatgtgaaacgtatgcttgctcccaacaactacaacgaataactattgacatccaagtagagttctttgtattttagtttcagtt |
343 |
T |
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| Q |
198 |
aacaacatggcgtcgaactctataatgatataccgatgtaactctttttcttt |
250 |
Q |
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| T |
342 |
aacaacatgacgtcgcactctataatgatataccgatgtaactctttttcttt |
290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6053 - 5801
Alignment:
| Q |
1 |
agcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttga |
100 |
Q |
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| T |
6053 |
agcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaatataaggtgttttgactagatttaatttga |
5954 |
T |
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| Q |
101 |
ttcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatcga---cgaagtagagttctttgtattttagtttcagtt |
197 |
Q |
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| T |
5953 |
ttattgcaattttcaaatgtgaaacgtatgcttgctcccaacaactacaacgaataactattgacatccaagtagagttctttgtattttagtttcagtt |
5854 |
T |
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| Q |
198 |
aacaacatggcgtcgaactctataatgatataccgatgtaactctttttcttt |
250 |
Q |
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| T |
5853 |
aacaacatgacgtcgcactctataatgatataccgatgtaactctttttcttt |
5801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 263
Target Start/End: Complemental strand, 13550860 - 13550625
Alignment:
| Q |
34 |
agagcataacatg---gctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttgattcttgcaattttcaaatgtgtaacgtatg |
130 |
Q |
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||||||||||||| ||||||||||||||||||| |||||| |||||||||| || |||||||||||||| |||||||||||||||||||||| ||| |
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| T |
13550860 |
agagcataacatgcatgctttgagagaattaggatctgaattgaaggtgtttttacatgatttaatttgattattgcaattttcaaatgtgtaacagatg |
13550761 |
T |
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| Q |
131 |
c-ttgctcccaacaactacaacgaataactatcgac---gaagtagagttctttgtattttagtttcagttaacaacatggcgtcgaactctataat--g |
224 |
Q |
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| T |
13550760 |
ctttgctcccaacaactacaa-gaataacgattgacattgaagcggagttcttcgtattttagtttcagttaacaacat-gagac-aattttaaatttag |
13550664 |
T |
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| Q |
225 |
atataccgatgtaactctttttctttgctttcttcttct |
263 |
Q |
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| T |
13550663 |
atatacctatgtaactctttttctttgctttcttcttct |
13550625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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