View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17658_low_8 (Length: 271)
Name: NF17658_low_8
Description: NF17658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17658_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13886985 - 13887243
Alignment:
| Q |
1 |
ttctcaaaacaaagttcaatattttccctaaaggaaacttcttcaaagacacagtttctgatttacttggagacggtattttcgctgtagataacgaaac |
100 |
Q |
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| T |
13886985 |
ttctcaaaacaaagttcaatattttccctaaaggaaacttcttcaaagacacagtttctgatttacttggagacggtattttcgctgtagataacgaaac |
13887084 |
T |
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| Q |
101 |
atggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctc |
200 |
Q |
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| T |
13887085 |
atggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctc |
13887184 |
T |
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| Q |
201 |
atacctgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatatttt |
259 |
Q |
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| T |
13887185 |
atacctgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatatttt |
13887243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 13898219 - 13897961
Alignment:
| Q |
1 |
ttctcaaaacaaagttcaatattttccctaaaggaaacttcttcaaagacacagtttctgatttacttggagacggtattttcgctgtagataacgaaac |
100 |
Q |
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| T |
13898219 |
ttctcaaaacaaagtttagtaatttccctaaaggaaactacttcagagacatagtatctgaattactcggagacggtactttcgctgctgacaatgaaac |
13898120 |
T |
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| Q |
101 |
atggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctc |
200 |
Q |
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| T |
13898119 |
atggcagaaacaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaattaagtcaatttttgagcttgtgaacaataggctc |
13898020 |
T |
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| Q |
201 |
atacctgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatatttt |
259 |
Q |
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|||||||||||||| ||||| ||||||||| ||| | || ||||||||||||||||| |
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| T |
13898019 |
atacctgtcttagaatcatcattgaagaaaaatgttgcaatagatcttcaagatatttt |
13897961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 1035276 - 1035018
Alignment:
| Q |
1 |
ttctcaaaacaaagttcaatattttccctaaaggaaacttcttcaaagacacagtttctgatttacttggagacggtattttcgctgtagataacgaaac |
100 |
Q |
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|||||||||||||||||| | ||| ||||||||||||| |||| ||||| ||||||||| ||||| ||||||||||||||| ||| || || ||||| |
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| T |
1035276 |
ttctcaaaacaaagttcactgtttatcctaaaggaaactatttcagagacatagtttctgaattactcggagacggtattttcactgctgacaatgaaac |
1035177 |
T |
|
| Q |
101 |
atggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaacaactgattcattgtttgagcttgtgaacaataggctc |
200 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||| || ||||||| ||| ||| | |||||||||||||||||||||||| |
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| T |
1035176 |
atggcagaaacaaaggaaaatagctagtatcgagtttcattcgacaaattttagaaagttaacaaatgagtcaatttttgagcttgtgaacaataggctc |
1035077 |
T |
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| Q |
201 |
atacctgtcttagattcatcgttgaagaaatcggtttccatcgatcttcaagatatttt |
259 |
Q |
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||||| |||||||| | ||| ||||||||| ||| |||| ||||||||||||||||| |
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| T |
1035076 |
ataccagtcttagaattatcattgaagaaaaatgttgccatagatcttcaagatatttt |
1035018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 28667494 - 28667370
Alignment:
| Q |
63 |
ttacttggagacggtattttcgctgtagataacgaaacatggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaa |
162 |
Q |
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||||||||||| ||||| ||| || |||| | |||| |||||| |||||||| ||||||||||| |||||||||||||| || ||||| || || |||| |
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| T |
28667494 |
ttacttggagatggtatattcagtgcagatgatgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaa |
28667395 |
T |
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| Q |
163 |
caactgattcattgtttgagcttgt |
187 |
Q |
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|||||||||| |||||||||||||| |
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| T |
28667394 |
caactgattctttgtttgagcttgt |
28667370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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