View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17659_high_2 (Length: 343)
Name: NF17659_high_2
Description: NF17659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17659_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 4860600 - 4860938
Alignment:
| Q |
5 |
cataagaactgagatttaaactctaaacatctaatttttcacatttaaaatgc----------agaaatagattacttgatcgacacaaaattgatgtca |
94 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
4860600 |
cataagaactgagatttaaactctaaatatctaatttttcacatttaaaatacgtaaaatccaacaaatagagtacttgatcaacataaaattgatgtca |
4860699 |
T |
|
| Q |
95 |
ttgaacatagttgatttcttaagatgactaacccaaaatatgtccaagaaagaaacacaatgttaaggatagagttgatatagtagctagctagctagct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4860700 |
ttgaacatagttgatttcttaagatgactaacccaaaatatgtccaagaaagaaaaataatgttaaggatagagttgatatagtagc----tagctagct |
4860795 |
T |
|
| Q |
195 |
ggcaacgtatctagggcgaagctgatttgacactgcatgcagggggcccaaataagcattccctacggcccccaacagcatgtagcactcggagaattaa |
294 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4860796 |
ggcaacgtatctagggtgaagctgatttgacactgcatgcagggggcccaaataagcaatccctacggcccccaacagcatgtagcactcggagaattaa |
4860895 |
T |
|
| Q |
295 |
caccctactctttctattcaatccaccagcaaccctatgctac |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4860896 |
caccctactctttctattcaatccaccagcaaccctatgctac |
4860938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University