View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17659_low_1 (Length: 432)
Name: NF17659_low_1
Description: NF17659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17659_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 4860187 - 4860391
Alignment:
| Q |
17 |
aaacctcaccgttgaactattttactctcattttttatattaaaaactcatctcataacacatgaaagnnnnnnnnt--tgtgtgaatttatcctcctta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4860187 |
aaacctcaccgttgaactattttactctcattttttatattaaaaactcatctcataacacatgaaagaaaaaaaatattgtgtgaatttatcctcctta |
4860286 |
T |
|
| Q |
115 |
attaaaattta--cagccatacaagatatcaacgcaaatattttccaagaaacaaattaacaatgctatattaaaaccctttacgggattgcttatttgt |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4860287 |
attaaaatttatacagccatacaagatatcaacgcaaatattttccaagaaacaaattaacaatgctatattaaaaccctttacgggattgcttatttgt |
4860386 |
T |
|
| Q |
213 |
gagga |
217 |
Q |
| |
|
||||| |
|
|
| T |
4860387 |
gagga |
4860391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 4860479 - 4860569
Alignment:
| Q |
323 |
attgttttttcctaaaaagaaattatgcattgtttttatttgtatttcattttcttaacgataatttcatttcaagtgattagttcaataa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4860479 |
attgttttttcctaaaaagaaattatgcattgtttttatatgtatttcattttcttaacaataatttcatttcaagtgattagttcaataa |
4860569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University