View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1765_high_1 (Length: 420)
Name: NF1765_high_1
Description: NF1765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1765_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 8322983 - 8323376
Alignment:
| Q |
16 |
agaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcaggactatgaagaatcactgccctatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8322983 |
agaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcaggactatgaagaatcactgccctatc |
8323082 |
T |
|
| Q |
116 |
atgtggagacacaaaagctaatccaaaataaacaggtttcccccatccaaaatcagcttcataaataggcatactcatccaactagtaaaattaaaattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8323083 |
atgtggagacacaaaagctaatccaaaataaacaggcttcccccatccaaaatcagcttcgtaaataggcatactcatccaactagtaaaattaaaattt |
8323182 |
T |
|
| Q |
216 |
ggatttccaaaatatggaatattttctcctacaccacccataaacaatttccttgcatcatccaaatgttcaaaacccctaataacatcaatttgtgacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8323183 |
ggatttccaaaatatggaatattttctcctacaccacccataaacaatttccttgcatcatccaaatgttcaaaacccctaataacatcaatttgtgacc |
8323282 |
T |
|
| Q |
316 |
ttataaattcatcacttactaactcagttgcttcccttatcatttgtgcaacataacctaaaggctttgatgtgatttctccaacataccctat |
409 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8323283 |
ttataaactcatcacttactaactcagttgcttcccttatcatttgtgcaacataacctaaaggctttgatgtgatttctccaacataccctat |
8323376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 18316021 - 18315641
Alignment:
| Q |
16 |
agaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcaggactatgaagaatcactgccctatc |
115 |
Q |
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||||||||||||| ||||||| | |||| ||| ||||||||||| ||| |||| | |||| ||||| |||| ||||| |||||||| | | ||||| |
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| T |
18316021 |
agaagaacttcttgaaaagctgcataagttcaacctgaaaatgcatacaaacaatagcagaaccatcctcatcgggactcaaaagaatcaatcctctatc |
18315922 |
T |
|
| Q |
116 |
atgtggagacacaaaagctaatccaaaataaacaggtttcccccatccaaaatcagcttcataaataggcatactcatccaactagtaaaattaaaattt |
215 |
Q |
| |
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|| |||||||||| | ||| ||||||| | ||| || ||||| ||||||||||||| ||| ||||| | |||||||||| || | || || ||| |
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| T |
18315921 |
atttggagacacatatcctataccaaaatgcataggctttccccacccaaaatcagctttatatgaaggcaaagtcatccaacttgttatatgaagatta |
18315822 |
T |
|
| Q |
216 |
ggatttccaaaatatggaatattttctcctaca-ccacccataaacaatttccttgcatcatccaaatgttcaaaacccctaataacatcaatttgtgac |
314 |
Q |
| |
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||||| ||| || ||| || || ||||| ||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18315821 |
ggattcccagaaaatgtaacatc----cctacctccaaccaaaaataatttccttgcatcatccaaattctcaaaacccctaataacatcaatttgtgac |
18315726 |
T |
|
| Q |
315 |
cttataaattcatcacttactaactcagttgcttcccttatcatttgtgcaacataacctaaaggctttgatgtgatttctccaa |
399 |
Q |
| |
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|||||| | |||| ||| |||||| |||||||||||||| ||||||||||||||| || ||||||||||| |||||||||| |
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|
| T |
18315725 |
cttatatactcatttgttatcaactcatttgcttcccttatcttttgtgcaacataactcaatggctttgatgtaatttctccaa |
18315641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 18316849 - 18317240
Alignment:
| Q |
16 |
agaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcaggactatgaagaatcactgccctatc |
115 |
Q |
| |
|
|||| |||||||| ||||||| | |||| ||| |||||||||| |||||||| |||||| |||||||| |||||||| | ||| | | ||||||| |
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| T |
18316849 |
agaacaacttcttgaaaagctgcataagttcaacttgaaaatgcatacacacaataacagaaccatctccttcaggacttaaataaattaatcccctatc |
18316948 |
T |
|
| Q |
116 |
atgtggagacacaaaagctaatccaaaataaacaggtttcccccatccaaaatcagcttcataaataggcatactcatccaactagtaaaattaaaattt |
215 |
Q |
| |
|
||||||||||||| | |||| ||||| |||| || || ||||| ||||||||||||| || ||||| | ||||||||| || | || || ||| |
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| T |
18316949 |
atgtggagacacatatcctaaaccaaagtaaaatggctttccccacccaaaatcagctttatgtgaaggcaaagccatccaacttgttatatgaagatta |
18317048 |
T |
|
| Q |
216 |
ggatttccaaaatatggaatattttctcctacaccacccataaacaatttccttgcatcatccaaatgttcaaaacccctaataacatcaatttgtgacc |
315 |
Q |
| |
|
||||| |||||||||| | ||| | ||| | ||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |
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|
| T |
18317049 |
ggattcccaaaatatgtagcattcttaccttctccacctataaacaatttccttgcatcatctaaattttcaaaacctctaataacatcaatttgtgacc |
18317148 |
T |
|
| Q |
316 |
ttataaattcatcacttactaactcagttgcttcccttatcatttgtgcaacataacctaaaggctttgatgtgatttctccaacataccct |
407 |
Q |
| |
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|||| |||||| ||| |||||| ||||||||||||| | ||||||||||| || ||||| ||| ||||||||||| ||||||| |
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| T |
18317149 |
ttatgtattcatttgttatcaactcatgtgcttcccttatcttcattgcaacataactcaacggcttcgataagatttctccaatataccct |
18317240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 19995443 - 19995519
Alignment:
| Q |
16 |
agaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcagga |
92 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
19995443 |
agaagaacttcttgaaaagctccaaacatgcaatctggaaatgcaaacacacaagaatagatccatctccatcagga |
19995519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 19995265 - 19995341
Alignment:
| Q |
16 |
agaagaacttcttaaaaagctctaaaagtgcaatctgaaaatgcaaacacacaagaacagatccatctccatcagga |
92 |
Q |
| |
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|||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19995265 |
agaagaacttatggaaaagctccaaaagtgtaatctgaaaatgcaaacacacaagaacttatccatctccatcagga |
19995341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 3508695 - 3508647
Alignment:
| Q |
156 |
ccccatccaaaatcagcttcataaataggcatactcatccaactagtaa |
204 |
Q |
| |
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||||| |||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
3508695 |
ccccaaccaaaatctgcttcataaactggcatactcatccaactcgtaa |
3508647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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