View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1765_high_2 (Length: 396)
Name: NF1765_high_2
Description: NF1765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1765_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 29221064 - 29220701
Alignment:
| Q |
17 |
atgaaagtcctgttattgtagggaaatcattgttgctaatcatggtatggtctagtataagtaggagaactcatcactcgctataccttagggctttgcg |
116 |
Q |
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| T |
29221064 |
atgaatgtcctgttattgtagggaaatcattgttgctaatcatggtatggtctagtataagtaggagaacacatctctcgccataccttagggctttgcg |
29220965 |
T |
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| Q |
117 |
aaattccccagaaatcaggtaatttgatgcttacgttctttcttaagtttttgttactctttttctttagtaggttatagtcaatgttgctctacggaat |
216 |
Q |
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| T |
29220964 |
aaattccccagaaatcaggtaatttgatgcttacgttctttcttaagtttttgttactctttttctttagtaggttatagtcaatgttgctctacggaat |
29220865 |
T |
|
| Q |
217 |
gctccaaagtatatttgtaatttgtattgaggaaataagaacttttactttactagctgaggaggcctctatgacaaattttctcacaaatttaatgcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29220864 |
gctccaaagtatatttgtaatttgtattgaggaaataagaacttttactttactagctgaggaggcctctatgacaaattttctcacaaatttaatgcgt |
29220765 |
T |
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| Q |
317 |
ttttatttgaatataattttgttgttgattcaggggccaatctattattcctgaacgactaggt |
380 |
Q |
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| T |
29220764 |
ttttatttgaatataattttgttgttgattcaggggctaatctattattcctgaaggactaggt |
29220701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 54 - 380
Target Start/End: Complemental strand, 21334379 - 21334057
Alignment:
| Q |
54 |
aatcatggtatggtctagtataagtaggagaactcatcactcgctataccttagggctttgcgaaattccccagaaatcaggtaatttgatgcttacgtt |
153 |
Q |
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| T |
21334379 |
aatcatggtctggaatattataagtaggagaactcatctctcaccataccttacggctttgcgaaattcctcagaattcaggtaatgtgatgcttatatt |
21334280 |
T |
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| Q |
154 |
ctttcttaagtttttgttactctttttctttagtaggttatag-tcaatgttgctctacggaatgctccaaagtatatttgtaatttgtattga-ggaaa |
251 |
Q |
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|||||| || ||| |||||||| ||||| | | | ||| | ||||| ||| |||| ||||| |||||||| |||||||||||||||||||| | ||| |
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| T |
21334279 |
ctttctgaactttgtgttactcattttc----gcaagctattgatcaattttgttctaaggaatactccaaagcatatttgtaatttgtattgatgaaaa |
21334184 |
T |
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| Q |
252 |
taagaacttttactttactagctgaggaggcctctatgacaaattttctcacaaatttaatgcgtttttatttga-atataattttgttgttgattcagg |
350 |
Q |
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| T |
21334183 |
taagatcttttactttactagttga--tggcat-tctgtcaaattttctctctactttaatgtgtttttatttgagttataattttattgttgattcagg |
21334087 |
T |
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| Q |
351 |
ggccaatctattattcctgaacgactaggt |
380 |
Q |
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| T |
21334086 |
ggccaatcgattattcctgaaggactaggt |
21334057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 251 - 369
Target Start/End: Complemental strand, 30342482 - 30342364
Alignment:
| Q |
251 |
ataagaacttttactttactagctgaggaggcctctatgacaaattttctcacaaatttaatgcgtttttatttgaatataattttgttgttgattcagg |
350 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
30342482 |
ataagaacttttactttactagctgaggaggtgtctctgacaaatttcatctcaaatttaatgtgtttttatgtgaatataattctgttgttgattcagg |
30342383 |
T |
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| Q |
351 |
ggccaatctattattcctg |
369 |
Q |
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||||||||||||||||||| |
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| T |
30342382 |
ggccaatctattattcctg |
30342364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 30342591 - 30342485
Alignment:
| Q |
99 |
ataccttagggctttgcgaaattccccagaaatcaggtaatttgatgcttacgttctttcttaagtttttgttactctttttctttagtaggttatagtc |
198 |
Q |
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||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||||||| || |
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| T |
30342591 |
ataccttagagctttgcgaaattcctcggaaatcaggtaatttgatgtttacattctttctttagtttctgttactttttttctttagtaggttatattc |
30342492 |
T |
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| Q |
199 |
aatgttg |
205 |
Q |
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||||||| |
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| T |
30342491 |
aatgttg |
30342485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 30343820 - 30343735
Alignment:
| Q |
18 |
tgaaagtcctgttattgtagggaaatcattgttgctaatcatggtatggtctagtataagtaggagaactcatcactcgctatacc |
103 |
Q |
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|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
30343820 |
tgaatgtcctcttattgtagggaaatcagtgttgctaatcatggtatggtctagtataagtaggagaactcatctctcgccatacc |
30343735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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