View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1765_high_3 (Length: 284)

Name: NF1765_high_3
Description: NF1765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1765_high_3
NF1765_high_3
[»] chr1 (2 HSPs)
chr1 (11-269)||(42205954-42206221)
chr1 (11-269)||(42214822-42215089)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 42206221 - 42205954
Alignment:
Q  11 cagagaaatatgttataatggatatgatttttaaattggctatccttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtttttgcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  42206221 cagagaaatgtgttataatggatatgatttttaaattggctatc-ttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtctt-gcc 42206124  T
Q  111 gtaaaacaattttatttactttaacaccgaattttacg-----------gtagtagtggtgtgatattgccatttcaacttatcgtgatggttcgtgaaa 199  Q
    ||||||||||||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42206123 gtaaaacaattttatttactttaacaccggattttacgaaatcatcccggtagtagtggtgtgatattgccatttcaacttatcgttatggttcgtgaaa 42206024  T
Q  200 gtccctttcgctgtactttttgaaaggaataacgtggattattttttactagaatatatcggtaaaacct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42206023 gtccctttcgctgtactttttgaaaggaataacgtggattattttttactagaatatatcggtaaaacct 42205954  T

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Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 42215089 - 42214822
Alignment:
Q  11 cagagaaatatgttataatggatatgatttttaaattggctatccttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtttttgcc 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  42215089 cagagaaatgtgttataatggatatgatttttaaattggctatc-ttgtcacaaaatatatacaattttaattctagattgttaaaaaggagtctt-gcc 42214992  T
Q  111 gtaaaacaattttatttactttaacaccgaattttacg-----------gtagtagtggtgtgatattgccatttcaacttatcgtgatggttcgtgaaa 199  Q
    ||||||||||||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42214991 gtaaaacaattttatttactttaacaccggattttacgaaatcatcccggtagtagtggtgtgatattgccatttcaacttatcgttatggttcgtgaaa 42214892  T
Q  200 gtccctttcgctgtactttttgaaaggaataacgtggattattttttactagaatatatcggtaaaacct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42214891 gtccctttcgctgtactttttgaaaggaataacgtggattattttttactagaatatatcggtaaaacct 42214822  T

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