View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1765_high_7 (Length: 230)
Name: NF1765_high_7
Description: NF1765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1765_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 44306757 - 44306588
Alignment:
| Q |
17 |
agaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44306757 |
agaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgttgatgaagctcatgctggagaaattgttatgttgttcgatgctct |
44306658 |
T |
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| Q |
117 |
tcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
186 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44306657 |
tcttaaatctggagatacttttactgatgggtctgttagatatacaatgacttctgccgatgttcctact |
44306588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 43896304 - 43896137
Alignment:
| Q |
16 |
aagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctc |
115 |
Q |
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|||||||||||||||| | |||| |||||||||||||||| |||||||| | | ||||||||||||||||||||| ||| |||| |||| |||||| |
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| T |
43896304 |
aagaagattcagattcctcgtttgtttaagagacatgatgataagattgaggaagttgatgaagctcatgctggagagattattattgtgttagatgcta |
43896205 |
T |
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| Q |
116 |
ttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcct |
183 |
Q |
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| T |
43896204 |
ttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgccgatgttcct |
43896137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 44301649 - 44301480
Alignment:
| Q |
17 |
agaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctct |
116 |
Q |
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|||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||| |||| | | | | |
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| T |
44301649 |
agaagattcagatttatagcttgtctaagagacatgatgatgtgattgagtttgttgatgaagctcatgccggagaaattgttattgtgttagctattgt |
44301550 |
T |
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| Q |
117 |
tcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
186 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
44301549 |
tcttaaatctggagatacttttactgatgggtctgttagatatacaatgtcttctgccgatgttcctact |
44301480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 44312537 - 44312372
Alignment:
| Q |
16 |
aagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctc |
115 |
Q |
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||||||||| |||||| | ||| ||||||||||| ||| | ||||| || | | |||||||||||||||||||||||||||| | |||| | |||| |
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| T |
44312537 |
aagaagattaagattccttgtttgggtaagagacattatggtaagattaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttggtgcta |
44312438 |
T |
|
| Q |
116 |
ttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttc |
181 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
44312437 |
ttcttagatctggagatacttttactgatgggtctgttagatatataatgacttctgccgatgttc |
44312372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 43895669 - 43895619
Alignment:
| Q |
122 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
172 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
43895669 |
aatctggagatacttttgctgatgggtctgttagatattcaatgacctctg |
43895619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 44306093 - 44306043
Alignment:
| Q |
122 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
172 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||| ||||||| |||| |
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| T |
44306093 |
aatctggagatacttttgctgatgggtccgttagatattcaatgacctctg |
44306043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 8159129 - 8159230
Alignment:
| Q |
72 |
tgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttct |
171 |
Q |
| |
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|||||||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
8159129 |
tgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgacttct |
8159228 |
T |
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| Q |
172 |
gc |
173 |
Q |
| |
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|| |
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| T |
8159229 |
gc |
8159230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 4084366 - 4084249
Alignment:
| Q |
72 |
tgatgaagctcatgctggagaaattgttat---gtt---gttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatg |
165 |
Q |
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|
|||||||||||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
4084366 |
tgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattagatatacaatg |
4084267 |
T |
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| Q |
166 |
acttctgcagatgttcct |
183 |
Q |
| |
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|||||||| ||||||||| |
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| T |
4084266 |
acttctgccgatgttcct |
4084249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 18701855 - 18701741
Alignment:
| Q |
72 |
tgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactg---atgggtctgttagatatacaatgact |
168 |
Q |
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|
|||||||||||||||||||||||||||| | | || ||||||| |||| |||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
18701855 |
tgatgaagctcatgctggagaaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatgggtctgttagatatacaatgact |
18701756 |
T |
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| Q |
169 |
tctgcagatgttcct |
183 |
Q |
| |
|
||||| ||||||||| |
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| T |
18701755 |
tctgctgatgttcct |
18701741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
| Q |
127 |
ggagatactttcactgatgggtctgttagatatacaatgacttc |
170 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
15040348 |
ggagatacttttactgatgggtctgttaaatatacaatgacttc |
15040305 |
T |
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