View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1765_low_10 (Length: 234)

Name: NF1765_low_10
Description: NF1765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1765_low_10
NF1765_low_10
[»] chr1 (3 HSPs)
chr1 (1-221)||(5382472-5382692)
chr1 (9-111)||(23550563-23550664)
chr1 (9-111)||(35755770-35755871)
[»] chr8 (5 HSPs)
chr8 (1-111)||(7807463-7807571)
chr8 (9-111)||(988109-988210)
chr8 (1-111)||(7836886-7836995)
chr8 (4-73)||(9418351-9418420)
chr8 (9-82)||(24097242-24097315)
[»] chr5 (4 HSPs)
chr5 (1-92)||(11222387-11222478)
chr5 (1-92)||(42733584-42733675)
chr5 (11-92)||(26651730-26651811)
chr5 (11-92)||(26923315-26923396)
[»] chr4 (4 HSPs)
chr4 (9-111)||(25515126-25515227)
chr4 (11-111)||(25538477-25538576)
chr4 (9-111)||(50065830-50065930)
chr4 (59-120)||(11481370-11481431)
[»] chr2 (3 HSPs)
chr2 (1-111)||(14272196-14272306)
chr2 (3-73)||(18577871-18577941)
chr2 (1-73)||(29910564-29910636)
[»] chr7 (3 HSPs)
chr7 (3-92)||(4314180-4314269)
chr7 (1-92)||(9735959-9736050)
chr7 (13-73)||(32817070-32817130)
[»] chr3 (4 HSPs)
chr3 (9-111)||(36433788-36433889)
chr3 (1-111)||(46280051-46280160)
chr3 (9-111)||(37919710-37919811)
chr3 (1-62)||(7786507-7786568)
[»] chr6 (1 HSPs)
chr6 (1-92)||(14099931-14100023)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5382692 - 5382472
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgt 100  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382692 tacaaagacaagaaaacatccccattggatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaaatgt 5382593  T
Q  101 ttcataagaataatctcaggaaagctctctacacttaagcttcttcacaagccatttacgtacaaaagaataagcatggactttttgatgaaaagtatta 200  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5382592 ttcataagaataatctcaagaaagctctcttcacttaagcttcttcacaagccatttacgtacaaaagaataagcatggactttttgatgaaaagtatta 5382493  T
Q  201 aatcatgtggatcaagaattt 221  Q
    ||||||||| |||||||||||    
T  5382492 aatcatgtgcatcaagaattt 5382472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 23550563 - 23550664
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    |||| |||||||| |||||||||||||||||  |||||||||||||| |||||| || ||||||| ||||| ||  |||||||| ||| |||||||| ||    
T  23550563 gaaggaaacatcctcatttgatgttttaaaagataacaaaaatattaagattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgag 23550661  T
Q  109 aat 111  Q
    |||    
T  23550662 aat 23550664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 35755871 - 35755770
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||| | ||  |||||||| ||| |||||||| ||    
T  35755871 gaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctacgagtgtgttttgtgagaaa-tgtttcatgag 35755773  T
Q  109 aat 111  Q
    |||    
T  35755772 aat 35755770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 7807463 - 7807571
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgt 100  Q
    ||||||| |||||| |||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||| ||  |||||||||||  |||    
T  7807463 tacaaagtgaagaagacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgaaaa--tgt 7807560  T
Q  101 ttcataagaat 111  Q
    ||||| |||||    
T  7807561 ttcatgagaat 7807571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 988109 - 988210
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||| ||  |||||||| ||| |||||||| ||    
T  988109 gaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgag 988207  T
Q  109 aat 111  Q
    |||    
T  988208 aat 988210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 7836886 - 7836995
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgt 100  Q
    ||||||| |||||| |||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||  ||  |||||||| ||| |||    
T  7836886 tacaaagtgaagaagacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactggtgtgttttgtgagaaa-tgt 7836984  T
Q  101 ttcataagaat 111  Q
    ||||| |||||    
T  7836985 ttcatgagaat 7836995  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 9418351 - 9418420
Alignment:
Q  4 aaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttat 73  Q
    |||| ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || |||||||    
T  9418351 aaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttat 9418420  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 24097315 - 24097242
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatg 82  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || |||||||  |||||||    
T  24097315 gaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatg 24097242  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 11222387 - 11222478
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
    ||||||| ||||||| ||||| |||||||||||||||||  ||||||||||||||| ||||| || |||||||| |||||||  ||||||||    
T  11222387 tacaaagtgaagaaagcatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttattcactaatgtgttttgtga 11222478  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 42733675 - 42733584
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
    ||||||| ||||||| ||||| ||| |||||||||||||  ||||||||||||||| ||||| || |||||||| |||||||  ||||||||    
T  42733675 tacaaagtgaagaaagcatcctcatatgatgttttaaaagataacaaaaatattacaattattattttgttattcactaatgtgttttgtga 42733584  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 26651730 - 26651811
Alignment:
Q  11 agaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || |||||||  |||||||  ||||||||    
T  26651730 agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtga 26651811  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 26923315 - 26923396
Alignment:
Q  11 agaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || |||||||  |||||||  ||||||||    
T  26923315 agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtga 26923396  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 25515126 - 25515227
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||| ||  |||||||| ||| |||||||| ||    
T  25515126 gaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgag 25515224  T
Q  109 aat 111  Q
    |||    
T  25515225 aat 25515227  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 25538576 - 25538477
Alignment:
Q  11 agaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaa 110  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||| ||  |||||||| ||| |||||||| ||||    
T  25538576 agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgataaa-tgtttcatgagaa 25538478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 50065930 - 50065830
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    |||||||||||||  ||||||||||||||||| |||| |||||||||| ||||| || ||||||| ||||| ||  |||||||| ||| |||||||| ||    
T  50065930 gaagaaaacatcctaatttgatgttttaaaatataac-aaaatattacaattattattttgttatctactagtgtgttttgtgagaaa-tgtttcatgag 50065833  T
Q  109 aat 111  Q
    |||    
T  50065832 aat 50065830  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 11481370 - 11481431
Alignment:
Q  59 ttatcatcttgttatttactaatgatttttgtgaaaaattgtttcataagaataatctcagg 120  Q
    |||| |||||||||| |||||||||||||||||| | |||||||| |||||||  |||||||    
T  11481370 ttattatcttgttatctactaatgatttttgtgagatattgtttcttaagaatgctctcagg 11481431  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14272196 - 14272306
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgt 100  Q
    ||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| || | ||   |||||||| || ||||    
T  14272196 tacaaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctattgattcgttttgtgagaatttgt 14272295  T
Q  101 ttcataagaat 111  Q
    ||||| |||||    
T  14272296 ttcatgagaat 14272306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 18577871 - 18577941
Alignment:
Q  3 caaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttat 73  Q
    ||||| |||||||||| || |||||||||||||||||  ||| ||||||||||| ||||| || |||||||    
T  18577871 caaagtgaagaaaacaccctcatttgatgttttaaaagataagaaaaatattacaattattattttgttat 18577941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29910564 - 29910636
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttat 73  Q
    |||||| ||||||||| |||  ||||||||| |||||||  ||| ||||||||||| ||||| || |||||||    
T  29910564 tacaaaaagaagaaaatatcttcatttgatgatttaaaagataaaaaaaatattacaattattattttgttat 29910636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 4314269 - 4314180
Alignment:
Q  3 caaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||||||| |  ||||| ||||||||||| |||||||  ||||||||    
T  4314269 caaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaaatatcataattattatcttgttattcactaatgtgttttgtga 4314180  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9735959 - 9736050
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
    ||||||| ||||||| ||||| |||||||||||||||||   ||||||||| |||| ||||| || |||| ||| |||||||  ||||||||    
T  9735959 tacaaagtgaagaaaccatcctcatttgatgttttaaaagagaacaaaaattttacaattattattttgtcattcactaatgtgttttgtga 9736050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 32817070 - 32817130
Alignment:
Q  13 aaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttat 73  Q
    ||||||||  |||||||||||||||||  ||||||||||||||| ||||| || |||||||    
T  32817070 aaaacatcatcatttgatgttttaaaagataacaaaaatattacaattattattttgttat 32817130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 36433889 - 36433788
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||| | ||  |||||||| ||| |||||||| ||    
T  36433889 gaagaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctacaagtgtgttttgtgagaaa-tgtttcatgag 36433791  T
Q  109 aat 111  Q
    |||    
T  36433790 aat 36433788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 46280160 - 46280051
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgt 100  Q
    ||||||| ||||||||||||   ||||||||||||||||  ||||||||||||||| ||||| || ||||||| ||||| ||  |||||||| ||| |||    
T  46280160 tacaaagtgaagaaaacatcataatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaa-tgt 46280062  T
Q  101 ttcataagaat 111  Q
    ||||| |||||    
T  46280061 ttcatgagaat 46280051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 37919710 - 37919811
Alignment:
Q  9 gaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtgaaaaattgtttcataag 108  Q
    |||||| |||||| |||||||||||||||||  ||||||||||||||| ||||| || ||||||| || || ||  |||||||| ||| |||||||| ||    
T  37919710 gaagaacacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctattagtgtgttttgtgagaaa-tgtttcatgag 37919808  T
Q  109 aat 111  Q
    |||    
T  37919809 aat 37919811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7786568 - 7786507
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgttttaaaatgtaacaaaaatattacgattat 62  Q
    ||||||| |||||||| |||  |||||||||||||||||  ||||||||||||||| |||||    
T  7786568 tacaaagtgaagaaaatatcatcatttgatgttttaaaagataacaaaaatattacaattat 7786507  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 14099931 - 14100023
Alignment:
Q  1 tacaaagagaagaaaacatccccatttgatgtttt-aaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 92  Q
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T  14099931 tacaaagtgaagaaaacatcttcatttgatgttttcaaaagataacaaaaatattacaattattatatttttattcactaatgtcttttgtga 14100023  T

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