View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17660_high_12 (Length: 359)
Name: NF17660_high_12
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17660_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 35293294 - 35293631
Alignment:
| Q |
1 |
aatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaa--agtac |
98 |
Q |
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| T |
35293294 |
aatggtggctttgtcttggccaaaatcaaatggattatggatgttgtcaaaatgtgttgttcatatgtcaatgaagcacttgaattactaaaaaaagtac |
35293393 |
T |
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| Q |
99 |
atccatacataaatgactataatttataatagttttaaacaaacgttacatgtttttctttgaaataaaacaaaggggttatagtcattttcatccatga |
198 |
Q |
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| T |
35293394 |
atccatacataaatgactataatttataatagttttaaacaaacgtcacatatttttctttgaaataaaataaaaggattatagtaattttcatccatga |
35293493 |
T |
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| Q |
199 |
atgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgattgtccattttattatttgagtgtatattttcagttgcat |
298 |
Q |
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| T |
35293494 |
atgtttaatagatagccgtaatagcctcttactgtattgaaattataaaatagttattaattgtacattttattatttgagtgtatattttcagttgcat |
35293593 |
T |
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| Q |
299 |
ttacattacatttagttaattacaagttactgatgatg |
336 |
Q |
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| T |
35293594 |
ttacattacatttagttaattacaagttacttatgatg |
35293631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 28585008 - 28584946
Alignment:
| Q |
273 |
atttgagtgtatattttcagttgcatttacattacatttagttaattacaagttactgatgatg |
336 |
Q |
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| T |
28585008 |
atttgagtgtaaattt-caattgcatttacattacatttagtttgttacaagttagttatgatg |
28584946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 8407300 - 8407219
Alignment:
| Q |
179 |
atagtcattttcatccatgaatgtttaacaaatagccgtaatagcctcttactgtatcgaaattacaaaatagttattgatt |
260 |
Q |
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| T |
8407300 |
atagtcattttcatccataaatgtgtaacgaataaccatattagtttctgaatgtatcaaaattttaaaatagttattgatt |
8407219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 2519076 - 2519027
Alignment:
| Q |
287 |
tttcagttgcatttacattacatttagttaattacaagttactgatgatg |
336 |
Q |
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| T |
2519076 |
tttcagttgcatttagattacatttagttagttataagttagttatgatg |
2519027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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