View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17660_high_14 (Length: 355)

Name: NF17660_high_14
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17660_high_14
NF17660_high_14
[»] chr7 (5 HSPs)
chr7 (17-330)||(18395911-18396233)
chr7 (217-276)||(27073633-27073692)
chr7 (217-276)||(27204621-27204680)
chr7 (223-328)||(40808414-40808521)
chr7 (264-313)||(23565313-23565363)
[»] chr8 (2 HSPs)
chr8 (209-328)||(11712240-11712361)
chr8 (230-311)||(32902442-32902524)
[»] chr2 (2 HSPs)
chr2 (209-328)||(4560904-4561025)
chr2 (246-286)||(28671801-28671841)
[»] chr4 (4 HSPs)
chr4 (171-328)||(21704065-21704225)
chr4 (171-286)||(3739397-3739511)
chr4 (237-324)||(6677306-6677394)
chr4 (230-311)||(36463657-36463738)
[»] scaffold0129 (1 HSPs)
scaffold0129 (230-310)||(19854-19933)
[»] chr3 (3 HSPs)
chr3 (230-286)||(37761765-37761820)
chr3 (212-286)||(21156738-21156811)
chr3 (233-286)||(40519479-40519532)
[»] chr1 (2 HSPs)
chr1 (237-311)||(8871315-8871390)
chr1 (225-281)||(2263271-2263327)
[»] chr5 (1 HSPs)
chr5 (212-286)||(5611451-5611524)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 18395911 - 18396233
Alignment:
Q  17 gatggacatcatcaaggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaagg 116  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18395911 gatggccataatcaaggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaagg 18396010  T
Q  117 t---------tttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 207  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396011 ttttggaggttttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 18396110  T
Q  208 tacgattttctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactt 307  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18396111 tacgattttctcggaacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactt 18396210  T
Q  308 taggttgaatgtctttggtgatg 330  Q
    |||||||||||||||||||||||    
T  18396211 taggttgaatgtctttggtgatg 18396233  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  217 ctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagag 276  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  217 ctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagag 276  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 40808414 - 40808521
Alignment:
Q  223 acttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtc 320  Q
    ||||||||  ||||||  |||| |||||||||||| |||||||  ||| ||||| || |||||| | | ||| ||||||||||||||| |||||| ||||    
T  40808414 acttgtgctctatatagaacttcattcttcatgttataagtaggacttaaagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtc 40808513  T
Q  321 tttggtga 328  Q
    ||||||||    
T  40808514 tttggtga 40808521  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 23565363 - 23565313
Alignment:
Q  264 agagcttcaagagtgagaaactttgggtatc-aaggaggtaactttaggtt 313  Q
    ||||||||||||| ||||||||| || |||| |||||||||||||||||||    
T  23565363 agagcttcaagagagagaaacttgggatatcaaaggaggtaactttaggtt 23565313  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 11712361 - 11712240
Alignment:
Q  209 acgattttctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactt 307  Q
    |||||||||| ||||| |||||| ||||||||  || |||||| |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  308 ta-ggttgaatgtctttggtga 328  Q
    || |||||| ||||||||||||    
T  11712261 tagggttgagtgtctttggtga 11712240  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 32902524 - 32902442
Alignment:
Q  230 cattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 311  Q
    |||| |||||||||| |||||||||||||| || || |||||||||| ||||||||| ||  |||| | ||||||||||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatcagatgaggtaactttagg 32902442  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 328
Target Start/End: Original strand, 4560904 - 4561025
Alignment:
Q  209 acgattttctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactt 307  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| || | | ||||||||| || |||||| ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  308 tag-gttgaatgtctttggtga 328  Q
    ||| ||||| ||||||||||||    
T  4561004 tagagttgagtgtctttggtga 4561025  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 28671801 - 28671841
Alignment:
Q  246 attcttcatgttttaagtagagcttcaagagtgagaaactt 286  Q
    |||||||||||||| ||||| |||||||||| |||||||||    
T  28671801 attcttcatgttttgagtagggcttcaagagagagaaactt 28671841  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 328
Target Start/End: Complemental strand, 21704225 - 21704065
Alignment:
Q  171 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagactttattcttcatgttttaagtaga-gct 269  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||| ||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  270 tcaagagtgagaaactttgggtatc-aaggaggtaacttt-aggttgaatgtctttggtga 328  Q
    ||||||| |||||||||  |  ||| || ||||||||||| |||||||| |||||||||||    
T  21704125 tcaagagagagaaacttgagaaatcaaatgaggtaactttaaggttgaaagtctttggtga 21704065  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 3739511 - 3739397
Alignment:
Q  171 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagactttattcttcatgttttaagtagagctt 270  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| |||||||| |||||||||||||| |||| |  ||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagtaca-ttt 3739413  T
Q  271 caagagtgagaaactt 286  Q
    |||||| |||||||||    
T  3739412 caagagagagaaactt 3739397  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  237 taagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 324  Q
    |||| ||| |||||||||||||| ||||| |||||||||  |||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  230 cattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 311  Q
    |||||| |||| ||| ||||||||| |||| |||||||||||||||| || |||||| ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  230 cattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttag 310  Q
    ||||||||| ||||| ||||||| |||||| ||||| |||||||||| | ||||||| ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 37761820 - 37761765
Alignment:
Q  230 cattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactt 286  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||| ||| |||||    
T  37761820 cattatataagactttattcttcatgtttttagttg-gcttcaagagagagtaactt 37761765  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 21156811 - 21156738
Alignment:
Q  212 attttctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactt 286  Q
    ||||||||| | ||||| ||| || |||||||| |||||||||||||| |  ||||||||||||| |||||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 21156738  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 40519532 - 40519479
Alignment:
Q  233 tatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactt 286  Q
    |||||||| ||| |||| |||||| || |||||||||||||||| |||||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaactt 40519479  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 8871390 - 8871315
Alignment:
Q  237 taagactttattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 311  Q
    |||| ||| ||||||||||||||  ||||||||||||||| ||||||||  || |||| ||| |||||||||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagg 8871315  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  225 ttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgaga 281  Q
    ||||||| |||||||| ||| ||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 5611524 - 5611451
Alignment:
Q  212 attttctcgggacttgtgcattatataagactttattcttcatgttttaagtagagcttcaagagtgagaaactt 286  Q
    ||||||||| | ||||| ||| || |||||||| |||||||||||||| |  ||||||||||||| |||||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 5611451  T

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