View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17660_high_17 (Length: 346)
Name: NF17660_high_17
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17660_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 326
Target Start/End: Complemental strand, 35524028 - 35523724
Alignment:
| Q |
22 |
catcatcatcacctctgccaaatcaaccgtatcaacttttcataggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35524028 |
catcatcatcacctctgccaaatcaaccgtatcaacttttcgtaggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgg |
35523929 |
T |
|
| Q |
122 |
gagagtgtgtgagagacnnnnnnnnctaaatttcttttgtgtgtgaactctcagccaaaagaaggacgtattgggtgagagttcacctaagaatttctca |
221 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35523928 |
gagagtatgtgagagacaaaaaaaattaaatttcttttgtgtgtgaactctcacccaaaagaagaacgtattgggtgagagttcacctaagaatttctca |
35523829 |
T |
|
| Q |
222 |
tagatagtgtgacaaagtaagaggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttcacgacggtgccatttgat |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
35523828 |
tagatagtgtgacaaagaaagaggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttgatgatggtgccatttgat |
35523729 |
T |
|
| Q |
322 |
gatgt |
326 |
Q |
| |
|
||||| |
|
|
| T |
35523728 |
gatgt |
35523724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 35518208 - 35518126
Alignment:
| Q |
244 |
ggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttcacgacggtgccatttgatgatgt |
326 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
35518208 |
ggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgt |
35518126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 43359155 - 43359083
Alignment:
| Q |
65 |
aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
137 |
Q |
| |
|
|||||||||||| |||||| | |||||||||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
43359155 |
aggataatgtttcattgacaccattttctccatacacacaatgtatcaccctcatgtgagagtgtgtgagaga |
43359083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 37025637 - 37025665
Alignment:
| Q |
192 |
ttgggtgagagttcacctaagaatttctc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37025637 |
ttgggtgagagttcacctaagaatttctc |
37025665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 15066041 - 15066092
Alignment:
| Q |
87 |
cttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
138 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
15066041 |
cttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagac |
15066092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 34311235 - 34311285
Alignment:
| Q |
88 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
138 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
34311235 |
ttttctccatacacataatgtaccaccctcacgtgagagtgcgtgagagac |
34311285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 13276472 - 13276541
Alignment:
| Q |
64 |
taggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtga |
133 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||| |||||||| | |||| |||||||||||| |
|
|
| T |
13276472 |
taggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtga |
13276541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 19989419 - 19989347
Alignment:
| Q |
65 |
aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
138 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
19989419 |
aggataatgtttcatagacactcttttctc-atacacacattgtaccactctcatgtgagagtgtgtgagagac |
19989347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 46135685 - 46135636
Alignment:
| Q |
88 |
ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga |
137 |
Q |
| |
|
||||||||||||||||| ||||||| || ||| |||||||||||||||| |
|
|
| T |
46135685 |
ttttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga |
46135636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 23045331 - 23045359
Alignment:
| Q |
192 |
ttgggtgagagttcacctaagaatttctc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23045331 |
ttgggtgagagttcacctaagaatttctc |
23045359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 48034808 - 48034879
Alignment:
| Q |
66 |
ggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac |
138 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| ||||||| | ||||| ||||||||||||||||| |
|
|
| T |
48034808 |
ggataatgttttatgtacacacttttttccatacacacattgtacca-cttcatgtgagagtgtgtgagagac |
48034879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University