View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17660_high_32 (Length: 316)

Name: NF17660_high_32
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17660_high_32
NF17660_high_32
[»] chr4 (2 HSPs)
chr4 (85-304)||(20319281-20319500)
chr4 (29-63)||(20319223-20319257)
[»] chr7 (2 HSPs)
chr7 (141-263)||(5740907-5741029)
chr7 (134-226)||(9786452-9786545)
[»] chr3 (3 HSPs)
chr3 (134-220)||(20289934-20290020)
chr3 (134-263)||(20337775-20337904)
chr3 (138-259)||(4839381-4839501)
[»] chr1 (1 HSPs)
chr1 (134-221)||(31260124-31260211)
[»] chr6 (2 HSPs)
chr6 (134-188)||(8322421-8322475)
chr6 (146-213)||(19713582-19713649)
[»] chr5 (1 HSPs)
chr5 (134-244)||(17924868-17924978)
[»] chr8 (3 HSPs)
chr8 (137-262)||(20988912-20989036)
chr8 (160-226)||(17971009-17971075)
chr8 (146-214)||(13833090-13833158)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 85 - 304
Target Start/End: Original strand, 20319281 - 20319500
Alignment:
Q  85 tgtgtgtgtagacccatattaataataagcatttctacctgtatgcatgttgttttggtttaaggaaggatggttggtaatacttcactgtttagtagga 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20319281 tgtgtgtgtagacccatattaataataagcatttctacctgtatgcatgttgttttggtttaaggaaggatggttggtaatacttcactatttagtagga 20319380  T
Q  185 atatgtaggttgtaaatctaactccaagttgttttattagccaactttttagaatatatcataccttaacctaagtcatttgacatcccttaaatgcctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20319381 atatgtaggttgtaaatctaactccaagttgttttattagccaactttttagaatatatcataccttaacctaagtcatttgacatcccttaaatgcctc 20319480  T
Q  285 aaaagtgtgtaaatagtatt 304  Q
    ||||||||||||||||||||    
T  20319481 aaaagtgtgtaaatagtatt 20319500  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 20319223 - 20319257
Alignment:
Q  29 aagagaccaaaaattttggagcttttggctcttga 63  Q
    |||||||||||||||||||||||||||||||||||    
T  20319223 aagagaccaaaaattttggagcttttggctcttga 20319257  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 5740907 - 5741029
Alignment:
Q  141 ggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttattagccaactttttagaata 240  Q
    |||||||||||||| | |||||||||||||| | ||||||||||||  |||||||| ||||||||||| ||||||||| ||||||| ||| |  | || |    
T  5740907 ggtttaaggaaggaagattggtaatacttcaatatttagtaggaatccgtaggttgaaaatctaactcaaagttgtttgattagccgactctcaaaaaaa 5741006  T
Q  241 tatcataccttaacctaagtcat 263  Q
    ||||  |||||||||||||||||    
T  5741007 tatcccaccttaacctaagtcat 5741029  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 9786452 - 9786545
Alignment:
Q  134 ttgttttggtttaaggaaggatggttggtaatacttcactgttt-agtaggaatatgtaggttgtaaatctaactccaagttgttttattagcc 226  Q
    |||||||||| || |||||||  ||| ||||||||||| ||||| |||||||||   ||||||| |||| ||||||||||||||||||||||||    
T  9786452 ttgttttggtatatggaaggaaagtttgtaatacttcaatgttttagtaggaatcactaggttgaaaatataactccaagttgttttattagcc 9786545  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 20289934 - 20290020
Alignment:
Q  134 ttgttttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgtttta 220  Q
    ||||||||||||||| || || |||||||||||||||| |||||||||||||| |||| | || |||||||||||||||||||||||    
T  20289934 ttgttttggtttaagaaatgaaggttggtaatacttcaatgtttagtaggaatttgtaagctgaaaatctaactccaagttgtttta 20290020  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 20337775 - 20337904
Alignment:
Q  134 ttgttttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttattagccaactttt 233  Q
    ||||||||||||||| || ||  |||  |||||||||| |||||||||| ||| | |||| || |||||||||||||||||||||||   ||| |||||     
T  20337775 ttgttttggtttaagaaatgaatgttattaatacttcaatgtttagtagaaatctataggctgaaaatctaactccaagttgttttaccggcctactttc 20337874  T
Q  234 tagaatatatcataccttaacctaagtcat 263  Q
    |  ||||||||  |||||||| ||||||||    
T  20337875 tcaaatatatcccaccttaacttaagtcat 20337904  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 4839501 - 4839381
Alignment:
Q  138 tttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttattagccaactttttaga 237  Q
    |||||||||||||||||  ||| ||| ||||||| |||||||||||||     ||||||  ||||||||| ||||||||||| |||||| || ||||  |    
T  4839501 tttggtttaaggaaggaatgttagtagtacttcaatgtttagtaggaaacctcaggttgataatctaacttcaagttgttttgttagcctac-ttttcta 4839403  T
Q  238 atatatcataccttaacctaag 259  Q
    |||||||  |||||||||||||    
T  4839402 atatatctcaccttaacctaag 4839381  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 31260124 - 31260211
Alignment:
Q  134 ttgttttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttat 221  Q
    ||||||||||||||||||||||   | ||||||||||| ||||||||||||||  |||||||| ||||||||||| |  |||||||||    
T  31260124 ttgttttggtttaaggaaggataactagtaatacttcattgtttagtaggaatccgtaggttgaaaatctaactcaatattgttttat 31260211  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 8322421 - 8322475
Alignment:
Q  134 ttgttttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatat 188  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  8322421 ttgttttggtttaaggaaggaaggttggtaatacttcaatgtttagttggaatat 8322475  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 19713582 - 19713649
Alignment:
Q  146 aaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagt 213  Q
    ||||||||| |||||| ||||| ||| ||||||||||||||   |||||||| | |||||||||||||    
T  19713582 aaggaaggaaggttggcaatacatcaatgtttagtaggaatccttaggttgttattctaactccaagt 19713649  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 17924868 - 17924978
Alignment:
Q  134 ttgttttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttattagccaactttt 233  Q
    |||||||||||||||||||||  ||| | ||| ||||| | |||||||||||| | || |||| |||||||||| |||||||| || |||||| ||||||    
T  17924868 ttgttttggtttaaggaaggaaagtttgaaatgcttcaatatttagtaggaatctatatgttggaaatctaacttcaagttgtgttgttagcctactttt 17924967  T
Q  234 tagaatatatc 244  Q
    |  ||||||||    
T  17924968 tcaaatatatc 17924978  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 20988912 - 20989036
Alignment:
Q  137 ttttggtttaaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttattagccaactttttag 236  Q
    ||||||||||||||||||  | || ||| | |||| |||||||||||||| | ||||||| |||||||||| ||||||||||||||| || |||||        
T  20988912 ttttggtttaaggaaggaaagatgataaaatttcaatgtttagtaggaatctataggttg-aaatctaacttcaagttgttttattaacctactttccca 20989010  T
Q  237 aatatatcataccttaacctaagtca 262  Q
    ||||||||  |||||||| |||||||    
T  20989011 aatatatcccaccttaacataagtca 20989036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 17971075 - 17971009
Alignment:
Q  160 ggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagttgttttattagcc 226  Q
    |||||||||||| ||||||||||||||   || |||| |||||||||||||||||||||| ||||||    
T  17971075 ggtaatacttcaatgtttagtaggaattcataagttgaaaatctaactccaagttgttttgttagcc 17971009  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 13833090 - 13833158
Alignment:
Q  146 aaggaaggatggttggtaatacttcactgtttagtaggaatatgtaggttgtaaatctaactccaagtt 214  Q
    ||||||| | |||| |||| |||||| ||||||||||||||   |||||||  ||||||||||||||||    
T  13833090 aaggaagaagggtttgtaacacttcaatgtttagtaggaatccttaggttgataatctaactccaagtt 13833158  T

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