View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17660_high_34 (Length: 314)
Name: NF17660_high_34
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17660_high_34 |
 | |
|
| [»] scaffold2107 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 70 - 294
Target Start/End: Complemental strand, 13473882 - 13473660
Alignment:
| Q |
70 |
tccttctatggctccaacatttgagaaggtgagtagtagctatacacccgatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaag |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13473882 |
tccttctatggctccaacatttgagaaggtgagtagtagctatatacccgatgatattgtact--gtattctctctaaacttcctgtcaaatctgttaag |
13473785 |
T |
|
| Q |
170 |
cggtttacatgcgttcgcaaaccatggtcacttttgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgt |
269 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13473784 |
cggtttacatgcgttcgtaaaccatggtcacttttgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgt |
13473685 |
T |
|
| Q |
270 |
atgatgacgacgacgatgatgatgt |
294 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
13473684 |
atgatgacgacgacgacgatgatgt |
13473660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 13473925 - 13473889
Alignment:
| Q |
39 |
cagaacctgtgcttacatgatttagttgtactccttc |
75 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
13473925 |
cagaacgtgtggttacatgatttagttgtactccttc |
13473889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 9763456 - 9763572
Alignment:
| Q |
93 |
agaaggtgagtagtagctatacacccgatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaacc |
192 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||| ||||| |||||||||| |||||||||||||| ||||||||||||| ||| | || ||||||||| | |
|
|
| T |
9763456 |
agaaggttagtagtagctatataccagatgacattgctttctgtattctctctaaacttcctgttaaatctgttaagcatttttcttgtgttcgcaaatc |
9763555 |
T |
|
| Q |
193 |
atggtcacttttgtttg |
209 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
9763556 |
atggtctcttttgtttg |
9763572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 284
Target Start/End: Original strand, 13280227 - 13280430
Alignment:
| Q |
81 |
ctccaacatttgagaaggtgagtagtagctatacacccgatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatg |
180 |
Q |
| |
|
||||||| ||||||||||| ||| ||| |||| |||||||||||||| ||| |||||| |||||||| ||| | ||| | |||| || ||| | || |
|
|
| T |
13280227 |
ctccaacgtttgagaaggttagtggtacttatatacccgatgatattgttttctctattctctctaaactccctattaaacatcttaaacgctttgcttg |
13280326 |
T |
|
| Q |
181 |
cgttcgcaaaccatggtcacttttgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgtatgatgacgac |
280 |
Q |
| |
|
||||||||| ||||||| | ||| |||| || |||| |||| | | |||||||||||||||| | ||||||||||| || || ||||||||| ||| |
|
|
| T |
13280327 |
tgttcgcaaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgcaacaatcttgtttccaaatctcaaacagggtatgatgatgac |
13280426 |
T |
|
| Q |
281 |
gacg |
284 |
Q |
| |
|
|||| |
|
|
| T |
13280427 |
gacg |
13280430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 40399874 - 40399838
Alignment:
| Q |
68 |
actccttctatggctccaacatttgagaaggtgagta |
104 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40399874 |
actccttccatggctccaacatttgagaaggtgagta |
40399838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2107
Description:
Target: scaffold2107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 140 - 55
Alignment:
| Q |
119 |
gatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaaccatggtcactttt |
204 |
Q |
| |
|
|||||||||||| | ||||||| |||||||| ||| |||| ||| | ||||| ||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
140 |
gatgatattgcatttggtattctctctaaactccctatcaagtctctcaagcgatttacttgcgttcgtaaatcatggtctctttt |
55 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University