View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17660_high_4 (Length: 404)

Name: NF17660_high_4
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17660_high_4
NF17660_high_4
[»] chr4 (2 HSPs)
chr4 (25-384)||(16988055-16988414)
chr4 (188-283)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (25-384)||(21807540-21807899)
chr2 (39-336)||(20971202-20971497)
chr2 (189-279)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (41-336)||(26465292-26465587)
chr5 (81-277)||(23884074-23884270)
chr5 (194-345)||(23958779-23958930)
chr5 (84-120)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (40-376)||(34068262-34068598)
chr6 (173-298)||(20850027-20850152)
chr6 (171-295)||(14617738-14617862)
chr6 (165-243)||(28561533-28561611)
chr6 (104-345)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (179-279)||(3004921-3005021)
chr7 (161-270)||(8853841-8853950)
chr7 (188-237)||(18477565-18477614)
chr7 (171-235)||(19666209-19666273)
chr7 (179-273)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (179-279)||(37737401-37737501)
chr1 (182-285)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (171-324)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (101-273)||(18551164-18551336)
chr8 (224-282)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (128-237)||(44667108-44667217)
chr3 (107-330)||(18963220-18963443)
chr3 (332-384)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 25 - 384
Target Start/End: Original strand, 16988055 - 16988414
Alignment:
Q  25 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988055 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 16988154  T
Q  125 ctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 224  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988155 ctagctggaaattctatctctgaatttcaagatattaaagccattatgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 16988254  T
Q  225 tagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 324  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16988255 tagaggttgctcattcctcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttc 16988354  T
Q  325 tacaccatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 384  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16988355 tacaccatctgacccttcatgcaaattacacactgattctagttctccttatgatgatgt 16988414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 283
Target Start/End: Original strand, 35088802 - 35088897
Alignment:
Q  188 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgat 283  Q
    |||||||||||||| ||  | |||||||| |||||| | ||||||||||||||   |  ||| || ||||| ||||||||||||||||| ||||||    
T  35088802 atcaaggatcttggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcatttctctctgtcaaagaaagtattgccttgat 35088897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 25 - 384
Target Start/End: Complemental strand, 21807899 - 21807540
Alignment:
Q  25 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21807899 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtatgttgatgatgtgatc 21807800  T
Q  125 ctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807799 ctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 21807700  T
Q  225 tagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 324  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  21807699 tagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactaatacatgatttttagcttccaaacctatttc 21807600  T
Q  325 tacaccatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 384  Q
    ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21807599 tacgccatctgacccttcctgcaaattacacactgattctagttctccttatgatgatgt 21807540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 39 - 336
Target Start/End: Complemental strand, 20971497 - 20971202
Alignment:
Q  39 ttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattc 138  Q
    |||||||||| |||||||||||||||||||| |||||||| | | ||||||||||||  || ||||| |||||||||||||||||  | |  || | |||    
T  20971497 ttcaatctgcatctgatcactctctcttcattaagaagacagatacttcattcacagccttgcttgtttatgttgatgatgtgattattgttggtacttc 20971398  T
Q  139 tatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcat 238  Q
      | ||||| || || || || |||  || |||||||||||| || ||||| |||| |||||| || || ||||| ||||||||| ||||||||||| ||    
T  20971397 actttctgagtttcaggacatcaaaatcaatctgcattcttccttcaagattaaggctcttggtcaattgaaatattttcttggtctagaggttgcttat 20971298  T
Q  239 tcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 336  Q
    || ||| |  | ||||||||||| |||||||| || |||||||| |  |  ||||||||| | ||| | ||||| ||||||| |||||||||||||||    
T  20971297 tcatcacagtgcatctctctttgccaaagaaaataatgtcttgacc--tagactgatacatgttttcttgcttcaaaacctgattctacaccatctga 20971202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 23682248 - 23682338
Alignment:
Q  189 tcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtct 279  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | |||| || ||  | ||||||||||||||||||||    
T  23682248 tcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggtatttcattgtgtcaaagaaagtattgtct 23682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 26465587 - 26465292
Alignment:
Q  41 caatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattcta 140  Q
    |||||| | |||||||| ||||| ||||| ||||||||   | |||||||||||| ||| ||||| |||||||||||||||||| |  | || | |||      
T  26465587 caatctacatctgatcattctcttttcattaagaagacatatacttcattcacagctttgcttgtttatgttgatgatgtgatcatcactggtacttcac 26465488  T
Q  141 tctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattc 240  Q
    |||||||||||||||| || |||||||||||||||||| ||||  | || |||||||||||||| || |||||||||||||||||||| |||||||||||    
T  26465487 tctctgaattccaagacatcaaagccattctgcattctgctttagaaattaaggatcttggccaattgaaatactttcttggtttagaagttgctcattc 26465388  T
Q  241 ttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 336  Q
     ||| |||| ||||||||||| |||||||| ||||||||||||||  ||||||||| | ||||| | ||| | ||||||| |||||||||||||||    
T  26465387 ctcacaaggcatctctctttgccaaagaaaatattgtcttgatctcctaactgatataggatttcttgctgcaaaacctgcttctacaccatctga 26465292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 277
Target Start/End: Complemental strand, 23884270 - 23884074
Alignment:
Q  81 cttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttc 180  Q
    |||||||||||||| |  | ||||||||||| |||||| | || || |||||||| ||  | | |||||| ||  | || |||| |||||| ||   |||    
T  23884270 cttcttcattcacaatacttcttgtgtatgtggatgatatcattcttgcaggaaactcactttatgaatttcagaacatcaaagacattcttcacaattc 23884171  T
Q  181 ttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgt 277  Q
    ||| || ||||| ||||||||||| |||||||| || |||||||||||||| |||||||||  | |||||||||| || || |||||||||||||||    
T  23884170 tttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggtagctcattctaaacaaggaatctcactatgccaaagaaagtattgt 23884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 345
Target Start/End: Original strand, 23958779 - 23958930
Alignment:
Q  194 gatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctt-tgtcaaagaaagtattgtcttgatcttttaact 292  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||||| |||| || | |||| ||||||||||| ||||| ||||||||| | |||    
T  23958779 gatcttggccaattgaaatacttccttggtttagaggttgctcactcttcacaagggat-tttcttatgtcaaagaaaatattgccttgatcttctgact 23958877  T
Q  293 gatacaagatttttagcttccaaacctgtttctacaccatctgacccttcatg 345  Q
    || ||| | ||  | || ||||||||| |||||||||||| ||| || |||||    
T  23958878 gacacatgtttccttgcatccaaacctctttctacaccatttgatccatcatg 23958930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 23958669 - 23958705
Alignment:
Q  84 cttcattcacagttttacttgtgtatgttgatgatgt 120  Q
    ||||||||||||||||||| || ||||||||||||||    
T  23958669 cttcattcacagttttactggtttatgttgatgatgt 23958705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 40 - 376
Target Start/End: Original strand, 34068262 - 34068598
Alignment:
Q  40 tcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattct 139  Q
    ||||||| |||||||||| ||| | |||| |||||||||  || ||||||| || || ||||| || ||||| |||||||||||  | || ||  | |||    
T  34068262 tcaatctacttctgatcattctttgttcaccaagaagaccactacttcatttactgtgttactagtctatgtggatgatgtgattattgctggtgactct 34068361  T
Q  140 atctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcatt 239  Q
     | |||||| | ||    || ||| ||||| ||||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||||||||||||||||    
T  34068362 ctttctgaacttcactccatcaaatccattttgcattcctcttttaaaatcaaggaccttggtcaattgaaatacttccttggcttagaggttgctcatt 34068461  T
Q  240 cttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctgaccc 339  Q
    ||||  |||| || ||||| ||||| ||||| ||||| |||||| |  ||||||||||  |  || | |||| |||||||||||| || |||||||||||    
T  34068462 cttctgaaggcatttctctatgtcagagaaaatattgccttgatttgctaactgatactggtcttctggcttgcaaacctgtttccactccatctgaccc 34068561  T
Q  340 ttcatgaaaattacacactgattctagttctccttat 376  Q
    ||| || || ||||| | |||||||||| | ||||||    
T  34068562 ttcttgcaagttacataatgattctagtgccccttat 34068598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 20850152 - 20850027
Alignment:
Q  173 cattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagt 272  Q
    |||||||| || || || || |||||||| ||||| || ||||||||||||||| || ||||||| |||||| ||||||| | | | || || |||||||    
T  20850152 cattcttcattcaaaattaaagatcttggtcagttgaagtactttcttggtttaaagtttgctcactcttcacaaggaatatttttgtgccagagaaagt 20850053  T
Q  273 attgtcttgatcttttaactgataca 298  Q
    |||||||||||||| | |||||||||    
T  20850052 attgtcttgatcttctcactgataca 20850027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 14617738 - 14617862
Alignment:
Q  171 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 270  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| || |||||||||||||||||||| |||||  |||| || || |||| | | |||||    
T  14617738 tgcattcctctttcaagattaaggacttgggccaattgaaataattccttggtttagaggttgctcactcttctcaaggcatttcacttttttagagaaa 14617837  T
Q  271 gtattgtcttgatcttttaactgat 295  Q
    ||||||||| |||||| | ||||||    
T  14617838 gtattgtctggatcttctcactgat 14617862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 28561533 - 28561611
Alignment:
Q  165 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttc 243  Q
    |||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||||||||    
T  28561533 ccatcctgcattcttccttcaagattaaagatcttggtcagttgaaatattttcttggattagaggtggcacattcttc 28561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 345
Target Start/End: Original strand, 12302377 - 12302618
Alignment:
Q  104 gtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggcc 203  Q
    ||||||||| ||||| ||||| | || ||  |||| || |||||||| ||| |||| |||||||| || |||||||| || ||||| || ||||||||      
T  12302377 gtgtatgttaatgatatgatcattgctggtgattccatgtctgaatttcaacatatgaaagccatcctacattcttccttcaagattaaagatcttggtt 12302476  T
Q  204 agttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatt 303  Q
    ||||||| ||||| | |  ||| || ||| | ||||| || |||||||||||  | | |||||| ||||||||  |||||||| | ||||||  | |       
T  12302477 agttaaattacttccatcattttgaagtttcacattcatctaaaggaatctccttgtatcaaaggaagtattgcattgatcttctcactgatctaggtca 12302576  T
Q  304 tttagcttccaaacctgtttctacaccatctgacccttcatg 345  Q
    | |  ||||||||||||||||||| || ||||| ||||||||    
T  12302577 tctgacttccaaacctgtttctactccttctgaaccttcatg 12302618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 3004921 - 3005021
Alignment:
Q  179 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 278  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  3004921 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 3005020  T
Q  279 t 279  Q
    |    
T  3005021 t 3005021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 8853841 - 8853950
Alignment:
Q  161 aaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctcttt 260  Q
    |||||||||||||| || || ||||| |||||||||||||| || || || || || ||||| |||||| |||||||||||||  ||||||| |||||||    
T  8853841 aaagccattctgcactcctcctttaaaatcaaggatcttggtcaattgaagtatttccttggattagagattgctcattcttctcaaggaatatctcttt 8853940  T
Q  261 gtcaaagaaa 270  Q
    |||| |||||    
T  8853941 gtcagagaaa 8853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 18477565 - 18477614
Alignment:
Q  188 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctca 237  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  18477565 atcaaggatcttggccagttgaaattttttcttggtttagaagttgctca 18477614  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 19666209 - 19666273
Alignment:
Q  171 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgct 235  Q
    ||||||| ||||| ||||| |||||  | |||||||| ||||| |||||||||||||||||||||    
T  19666209 tgcattcctctttcaagattaaggacttgggccagttgaaatattttcttggtttagaggttgct 19666273  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 19813392 - 19813298
Alignment:
Q  179 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 273  Q
    ||||| || ||||| |||| | |||| ||||||||||| ||||||||||| ||||||||||||  | |||| || || || || |||||||||||    
T  19813392 tctttcaaaatcaaagatcattgccaattaaaatacttccttggtttagaagttgctcattctgaacaagggatttccctatgccaaagaaagta 19813298  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 37737501 - 37737401
Alignment:
Q  179 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 278  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  37737501 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 37737402  T
Q  279 t 279  Q
    |    
T  37737401 t 37737401  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 13427994 - 13427891
Alignment:
Q  182 tttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttg 281  Q
    |||||||||||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||   || ||||||  | | || |||||||| ||||||||||    
T  13427994 tttaagatcaaggatcttggccagctaaaatattttcttggcatagaggtggcttattctaagaatggaatcagtatatgccaaagaaaatattgtcttg 13427895  T
Q  282 atct 285  Q
    ||||    
T  13427894 atct 13427891  T

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Target: scaffold0257 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 324
Target Start/End: Original strand, 8273 - 8426
Alignment:
Q  171 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 270  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| ||||||||||||||||||||||| |||||  |||| || ||| ||||||| | |||    
T  8273 tgcattcctctttcaagattaaggacttgggccaattgaaatattttcttggtttagaggttgctcactcttctcaaggcatatctgtttgtcagaaaaa 8372  T
Q  271 gtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 324  Q
     |||||||| |||||  | |||||| || |   ||||||||||||||| |||||    
T  8373 atattgtctggatctcctcactgattcaggtcatttagcttccaaaccagtttc 8426  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 273
Target Start/End: Complemental strand, 18551336 - 18551164
Alignment:
Q  101 cttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttg 200  Q
    ||||| ||||| |||||| | |||||||||||||||||  | ||||||||  || | || ||| ||||||| |||   ||||| || ||||| |||||||    
T  18551336 cttgtctatgtagatgatatcatcctagcaggaaattcactttctgaatttgaaaacatcaaaaccattcttcataactctttcaaaatcaaagatcttg 18551237  T
Q  201 gccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 273  Q
    ||||||| ||||| || ||||||||||| || |||||||||  | |||| || ||| | || |||||||||||    
T  18551236 gccagttgaaatatttccttggtttagaagtagctcattctgaacaagggatatctttatgccaaagaaagta 18551164  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 2998101 - 2998159
Alignment:
Q  224 ttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttga 282  Q
    |||||||||||||||||   | |||| |||||| ||| |||||||||||||||||||||    
T  2998101 ttagaggttgctcattccaaagaagggatctctatttctcaaagaaagtattgtcttga 2998159  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 44667217 - 44667108
Alignment:
Q  128 gcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 227  Q
    |||||||||||| | ||||| |||||| |||| ||| ||||||||||| |||| || |||||||| ||| | || ||||| || || ||||||||| | |    
T  44667217 gcaggaaattctctttctgagttccaacatatcaaatccattctgcatgcttcattcaagatcaaagatttgggacagttgaactattttcttggtcttg 44667118  T
Q  228 aggttgctca 237  Q
    ||||||||||    
T  44667117 aggttgctca 44667108  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 330
Target Start/End: Complemental strand, 18963443 - 18963220
Alignment:
Q  107 tatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagt 206  Q
    |||||||||||||||||  | || || ||  |||| |||||||| ||| |||| || |  || |||||||| || || || || || |||||||| ||||    
T  18963443 tatgttgatgatgtgataattgctggtaacactatgtctgaatttcaacatatcaatgatatcctgcattcgtcattcaaaattaaagatcttggtcagt 18963344  T
Q  207 taaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagattttt 306  Q
    | ||||| || ||||||||||| ||||| ||||| ||  ||||||||||| | || ||||| || |||||  |||||||| | | ||||  | |   | |    
T  18963343 tgaaatatttccttggtttagaagttgcacattcatctcaaggaatctctttgtgccaaaggaaatattgcattgatcttcttattgatttaggtcatct 18963244  T
Q  307 agcttccaaacctgtttctacacc 330  Q
    ||||||||||||||||||||||||    
T  18963243 agcttccaaacctgtttctacacc 18963220  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 4643416 - 4643364
Alignment:
Q  332 tctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 384  Q
    ||||| || ||||| ||| |||||| |||||||||| ||||||||||||||||    
T  4643416 tctgatccatcatgcaaactacacaatgattctagtgctccttatgatgatgt 4643364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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