View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17660_high_5 (Length: 386)
Name: NF17660_high_5
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17660_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 12638002 - 12637637
Alignment:
| Q |
21 |
acatcatccttttctttctcgttaagatattcgattacatccaacaaagccggattttcaacaacttgacaggaagttcctcttccaagcatatcgttaa |
120 |
Q |
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| T |
12638002 |
acatcatccttttctttctcgttaagatattcgattacatccaacaaagccggattttcaacaacttgacaggaagttcctcttccaagcatatcgttaa |
12637903 |
T |
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| Q |
121 |
gccgtttatatcttttattaagatcattgaacttatcctcacattgctgaggcgaaacacgataacctctttcagccataaccttagatatagatttcca |
220 |
Q |
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| T |
12637902 |
gccgtttatatcttttattaagatcattgaacttatcctcacattgctgaggcgaaacacgataacctctttcagccataaccttagatatagatttcca |
12637803 |
T |
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| Q |
221 |
cttaccctttttctgcaacactgcaaattttctccttccaccactaccaccttcagaactcccgtcctcgccaatataagacaccgccgttatcaaaagc |
320 |
Q |
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| T |
12637802 |
cttaccctttttctgcaacactgcaaattttctccttccaccactaccaccttcagaactcccgtcctcgccaatataagagaccgccgttatcaaaagc |
12637703 |
T |
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| Q |
321 |
ctcaccatcttatcagtccacttgacacgctgccacggcgacccctttttccctctacttccttct |
386 |
Q |
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| T |
12637702 |
ctcaccatcttatcagtccacttgacacgctgccacggcgacccctttttccctctacttccttct |
12637637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 27 - 362
Target Start/End: Original strand, 44578388 - 44578726
Alignment:
| Q |
27 |
tccttttctttctcgttaagatattcgattacatccaacaaagccggattttcaacaacttgacaggaagttcctcttccaagcatatcgttaagccgtt |
126 |
Q |
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| T |
44578388 |
tccttttctttctcagaaagataataaattccatccaaaagcgcaggattttccacaacctcgcaagaagttcccctccctaacatatcattcagctttt |
44578487 |
T |
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| Q |
127 |
tatatcttttattaagatcattgaacttatcctcacattgctgaggcgaaacacgataacctctttcagccataaccttagatatagatttccacttacc |
226 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||| || || || | | || |||||||||| |
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| T |
44578488 |
tataccttttattaagatcattgaatttatcctcacattgctgcggcgaaacatgacaacctctttcagccatgactttcgacacacatctccacttacc |
44578587 |
T |
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| Q |
227 |
ctttttctgcaacactgcaaattttctccttccac---cactaccaccttcagaactcccgtcctcgccaatataagacaccgccgttatcaaaagcctc |
323 |
Q |
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| T |
44578588 |
cttcttctgcagaaccgcaaatttccttcttccacttccaccaacaccatcagaagttctatcctcaccgatataagaaacagctgtaatcataagcctc |
44578687 |
T |
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| Q |
324 |
accatcttatcagtccacttgacacgctgccacggcgac |
362 |
Q |
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| T |
44578688 |
accatattatcagtccacttcacacgctgccaaggcgac |
44578726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 41825205 - 41825085
Alignment:
| Q |
59 |
atccaacaaagccggattttcaacaacttgacaggaagttcctcttccaagcatatcgttaagccgtttatatcttttattaagatcattgaacttatcc |
158 |
Q |
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| T |
41825205 |
atccaacaaagtttgattttcaacaactctacaagctgttcctttaccaagaatatcattaactcttttataccttttgttcaaatcattgaacttgtct |
41825106 |
T |
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| Q |
159 |
tcacattgctgaggcgaaaca |
179 |
Q |
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| T |
41825105 |
tcacattgttgaggtgaaaca |
41825085 |
T |
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