View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17660_high_6 (Length: 375)
Name: NF17660_high_6
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17660_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 25 - 348
Target Start/End: Complemental strand, 8285202 - 8284879
Alignment:
| Q |
25 |
catcaggtgcaccaatggtagtaggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtc |
124 |
Q |
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| T |
8285202 |
catcaggtgcaccaatggtagtaggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtc |
8285103 |
T |
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| Q |
125 |
ttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttc |
224 |
Q |
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| T |
8285102 |
ttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttc |
8285003 |
T |
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| Q |
225 |
atggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaac |
324 |
Q |
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| T |
8285002 |
atggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaac |
8284903 |
T |
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| Q |
325 |
cagataagtgattaaacctatgtg |
348 |
Q |
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| T |
8284902 |
cagataagtgattaaacctatgtg |
8284879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 34687276 - 34687150
Alignment:
| Q |
48 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatat |
147 |
Q |
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| T |
34687276 |
ggaggtagaggagcaagatcagttga---atcatcattacttgaagttgtcgtgacaccaaaattaaattgtgggtcttgttggtgcatgtgcatcatat |
34687180 |
T |
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| Q |
148 |
tcattgcttcctcttgaatcttctcttgat |
177 |
Q |
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| T |
34687179 |
tcatcgcttcctcttgaatattctcttgat |
34687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 48 - 274
Target Start/End: Complemental strand, 34695205 - 34694979
Alignment:
| Q |
48 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatat |
147 |
Q |
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| T |
34695205 |
ggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatat |
34695106 |
T |
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| Q |
148 |
tcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactag |
247 |
Q |
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| T |
34695105 |
gaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtag |
34695006 |
T |
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| Q |
248 |
aggtacatcaacattctgttgaggtaa |
274 |
Q |
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| T |
34695005 |
aggcagatcaacattttcttgaggtaa |
34694979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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