View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17660_low_2 (Length: 231)

Name: NF17660_low_2
Description: NF17660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17660_low_2
NF17660_low_2
[»] chr8 (2 HSPs)
chr8 (74-122)||(13388308-13388356)
chr8 (1-47)||(13389056-13389102)
[»] scaffold0035 (1 HSPs)
scaffold0035 (198-231)||(99913-99946)
[»] scaffold0028 (1 HSPs)
scaffold0028 (196-231)||(24422-24457)
[»] chr7 (2 HSPs)
chr7 (196-231)||(13138593-13138628)
chr7 (196-231)||(19328708-19328743)
[»] chr3 (1 HSPs)
chr3 (196-231)||(5213009-5213044)
[»] chr2 (1 HSPs)
chr2 (196-231)||(28712338-28712373)
[»] chr1 (1 HSPs)
chr1 (196-231)||(22600802-22600837)
[»] chr6 (1 HSPs)
chr6 (197-231)||(29917456-29917490)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 13388356 - 13388308
Alignment:
Q  74 cagtgttctctttctcaaaaccatcaaactccatttctgtaactctgtc 122  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13388356 cagtgttctctttctcagaaccatcaaactccatttctgtaactctgtc 13388308  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13389102 - 13389056
Alignment:
Q  1 atgacatgacaacactattaatgtttgactttgtattaattttttat 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13389102 atgacatgacagcactattaatgtttgactttgtattaattttttat 13389056  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 99913 - 99946
Alignment:
Q  198 agcaattataataagatattacatagtgaactct 231  Q
    ||||||||||||||||||||||||||||||||||    
T  99913 agcaattataataagatattacatagtgaactct 99946  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 24422 - 24457
Alignment:
Q  196 tgagcaattataataagatattacatagtgaactct 231  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24422 tgagcaattgtaataagatattacatagtgaactct 24457  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 13138593 - 13138628
Alignment:
Q  196 tgagcaattataataagatattacatagtgaactct 231  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13138593 tgagcaattgtaataagatattacatagtgaactct 13138628  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 19328708 - 19328743
Alignment:
Q  196 tgagcaattataataagatattacatagtgaactct 231  Q
    |||||||||||||| |||||||||||||||||||||    
T  19328708 tgagcaattataatcagatattacatagtgaactct 19328743  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 5213044 - 5213009
Alignment:
Q  196 tgagcaattataataagatattacatagtgaactct 231  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5213044 tgagcaattgtaataagatattacatagtgaactct 5213009  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 28712338 - 28712373
Alignment:
Q  196 tgagcaattataataagatattacatagtgaactct 231  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28712338 tgagcaattgtaataagatattacatagtgaactct 28712373  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 22600802 - 22600837
Alignment:
Q  196 tgagcaattataataagatattacatagtgaactct 231  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22600802 tgagcaattgtaataagatattacatagtgaactct 22600837  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 29917490 - 29917456
Alignment:
Q  197 gagcaattataataagatattacatagtgaactct 231  Q
    |||||||| ||||||||||||||||||||||||||    
T  29917490 gagcaattgtaataagatattacatagtgaactct 29917456  T

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