View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_11 (Length: 449)
Name: NF17661_high_11
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Complemental strand, 28615700 - 28615277
Alignment:
| Q |
10 |
aagaaaattgcgtctgctcgaaggaaagtggtaaagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaacact |
109 |
Q |
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| T |
28615700 |
aagaaaattgtgtctgctcgaaggaaagtggtaaagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaacact |
28615601 |
T |
|
| Q |
110 |
ctcacagagaaaataaactgaatcnnnnnnnaacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtct |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615600 |
ctcacagagaaaataaactgaatctttttttaacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtct |
28615501 |
T |
|
| Q |
210 |
cccaaactctcaagcctgttcatttgtacaagttttccactcttggtgtccagtttcaatttgtaaacgtcgagtccatacgaaagcttttcgatgtcga |
309 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615500 |
cccaaactcttaagcatgttcatttgtacaagttttccactcttggtgtccagtttcaatttgtaaacgtcgagtccatacgaaagcttttcgatgtcga |
28615401 |
T |
|
| Q |
310 |
ttagatatcttttcaccatccatatgtctccattcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacaatattcagtgctagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28615400 |
ttagatatcttttcaccatccatatgtctccattcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacgatattcagtgctagt |
28615301 |
T |
|
| Q |
410 |
tatcttctcatagtaagtaaaatt |
433 |
Q |
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| T |
28615300 |
tatcttctcatagtaagtaaaatt |
28615277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 28612140 - 28612280
Alignment:
| Q |
141 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
240 |
Q |
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||||||||| ||||||||| | |||||||| ||||| |||| || || || |||||||||||||||| ||||||||||||| ||||||| ||| ||| |
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| T |
28612140 |
aacttggagtgacaagaggctggcacagaaattgaatcacca--at-tccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaa |
28612236 |
T |
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| Q |
241 |
gttttccactcttggtgtccagtttcaatttgtaaacgtcgagt |
284 |
Q |
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| T |
28612237 |
gttttccactctggacatccagttccaatttgtacacgtcgagt |
28612280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 28617854 - 28617773
Alignment:
| Q |
13 |
aaaattgcgtctgctcgaaggaaagtggtaaagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaa |
95 |
Q |
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| T |
28617854 |
aaaattgcatccgcttgaaggaaagcggtaaagat-gtatccgacagcttccatccttcacattatagatcccgaaccctaaa |
28617773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 29288546 - 29288408
Alignment:
| Q |
141 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
240 |
Q |
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|||||||||||| |||||| | |||||||| |||| |||| | || || |||||||||||||||| ||||||||||||| ||||||| ||| ||| |
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| T |
29288546 |
aacttggagaaagcagaggccggcacagaaatggaatcaccaacacttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaa |
29288447 |
T |
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| Q |
241 |
gttttccactcttggtgtccagtttcaatttgtaaacgt |
279 |
Q |
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| T |
29288446 |
gttttccactctgggcatccagttccaatttgaaaacgt |
29288408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 28621958 - 28621909
Alignment:
| Q |
308 |
gattagatatcttttcaccatccatatgtctccattcaatgatttcacaa |
357 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
28621958 |
gattagatatcttctaaccatccatatgtctccattcaatgatttcacaa |
28621909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 29270558 - 29270506
Alignment:
| Q |
305 |
gtcgattagatatcttttcaccatccatatgtctccattcaatgatttcacaa |
357 |
Q |
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|||||||| | ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
29270558 |
gtcgattaaacatcttttcaccatccatgtgtctccagtcaatgatttcacaa |
29270506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 29283107 - 29282976
Alignment:
| Q |
141 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
240 |
Q |
| |
|
|||||||||||| |||||| | |||||| | ||||| |||| | || || |||||||||| ||||| ||||||||||||| ||||||| ||| | | |
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| T |
29283107 |
aacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttcta |
29283008 |
T |
|
| Q |
241 |
gttttccactcttggtgtccagtttcaatttg |
272 |
Q |
| |
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|||||||||||| || ||||||| ||||||| |
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| T |
29283007 |
gttttccactctgggcatccagttccaatttg |
29282976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 28623377 - 28623327
Alignment:
| Q |
198 |
aaaatgttgtctcccaaactctcaagcctgttcatttgtacaagttttcca |
248 |
Q |
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|||||||||||| ||||||||| ||| ||||||||||| ||||||||||| |
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| T |
28623377 |
aaaatgttgtcttccaaactcttaagtttgttcatttgttcaagttttcca |
28623327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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