View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_high_18 (Length: 397)
Name: NF17661_high_18
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 19072501 - 19072855
Alignment:
| Q |
24 |
gacatttttaatttaatgaactatctcttaaattattggataagaaaaaccaatgattagatttttaacgtgattttattatgctgtctattgttacctc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19072501 |
gacatttttaatttaatgaactatctcttaaagtattggataagaaaaacaaatgattagatttttaacgtgattttattatgctgtctattgttacctc |
19072600 |
T |
|
| Q |
124 |
aatataacccaggttttccggatccaattcttccattattaatgcagcatatccttctgcttgttcttttagctttgatagattgtttgcagaagcactt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19072601 |
aatataacccaggttttccggatccaattcttccattattaatgcagcatatccttctgcttgttcttttagctttgatagattgtttgcagaagcactt |
19072700 |
T |
|
| Q |
224 |
agcattataagctgttgattaaaattaatattaatattgaaattaaaaacagagtgtatgataagaaaaatataattattttaacaagaagaaaaatata |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19072701 |
agcattataagctgttgattaaaattaatattaatattgaaattaaaaacagagtgtatgataagaaaaatataattattttaac---aagaaaaatata |
19072797 |
T |
|
| Q |
324 |
atttattaagtaaatcttacctcttgtacttcctccctagttattcttccatcttcat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19072798 |
atttattaagtaaatcttacctcttgtacttcctccctagttattcttccatcttcat |
19072855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University