View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17661_high_19 (Length: 377)

Name: NF17661_high_19
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17661_high_19
NF17661_high_19
[»] chr1 (20 HSPs)
chr1 (123-358)||(5497524-5497759)
chr1 (16-96)||(13876887-13876967)
chr1 (48-95)||(10922724-10922771)
chr1 (16-77)||(16127539-16127600)
chr1 (12-56)||(10758264-10758308)
chr1 (16-96)||(16132475-16132555)
chr1 (16-76)||(25943218-25943278)
chr1 (48-103)||(23999336-23999391)
chr1 (48-102)||(2959738-2959792)
chr1 (16-87)||(34491473-34491548)
chr1 (48-97)||(27227609-27227658)
chr1 (48-96)||(1547283-1547331)
chr1 (48-96)||(22170750-22170798)
chr1 (46-97)||(43579241-43579292)
chr1 (16-98)||(27118328-27118410)
chr1 (48-98)||(47682625-47682675)
chr1 (48-97)||(38823209-38823258)
chr1 (48-96)||(11742482-11742530)
chr1 (51-95)||(14758038-14758082)
chr1 (48-96)||(16415641-16415689)
[»] chr3 (29 HSPs)
chr3 (7-96)||(40640593-40640682)
chr3 (16-96)||(47930634-47930714)
chr3 (13-95)||(19606879-19606961)
chr3 (16-96)||(45879466-45879546)
chr3 (16-93)||(38392596-38392673)
chr3 (15-95)||(32180714-32180794)
chr3 (16-97)||(42204341-42204426)
chr3 (48-94)||(53818509-53818555)
chr3 (48-97)||(4015450-4015499)
chr3 (16-97)||(49359596-49359677)
chr3 (7-95)||(26000525-26000612)
chr3 (7-82)||(7568678-7568753)
chr3 (7-94)||(44880794-44880880)
chr3 (51-96)||(22450959-22451004)
chr3 (48-97)||(53811976-53812025)
chr3 (48-96)||(11466815-11466863)
chr3 (12-96)||(18272188-18272271)
chr3 (48-96)||(48354932-48354980)
chr3 (15-93)||(4556543-4556622)
chr3 (48-95)||(11835743-11835790)
chr3 (48-95)||(25579731-25579778)
chr3 (48-95)||(29163839-29163886)
chr3 (48-99)||(37203055-37203106)
chr3 (48-98)||(51213118-51213168)
chr3 (48-97)||(20373433-20373482)
chr3 (48-96)||(21193597-21193645)
chr3 (48-96)||(26941397-26941445)
chr3 (56-96)||(39282644-39282684)
chr3 (48-96)||(55343421-55343469)
[»] chr4 (24 HSPs)
chr4 (13-96)||(2704512-2704595)
chr4 (7-98)||(17612333-17612423)
chr4 (16-94)||(2266824-2266902)
chr4 (12-94)||(20097451-20097537)
chr4 (7-95)||(51204580-51204672)
chr4 (48-97)||(38811812-38811861)
chr4 (16-94)||(9743590-9743668)
chr4 (25-94)||(33255501-33255570)
chr4 (51-96)||(38011854-38011899)
chr4 (48-96)||(38812260-38812308)
chr4 (48-96)||(55478058-55478106)
chr4 (48-95)||(4597994-4598041)
chr4 (48-94)||(27396618-27396664)
chr4 (51-97)||(28003152-28003198)
chr4 (48-94)||(34948260-34948306)
chr4 (48-94)||(47236866-47236912)
chr4 (48-90)||(52195645-52195687)
chr4 (48-94)||(52516599-52516645)
chr4 (48-97)||(53337576-53337625)
chr4 (48-97)||(55241267-55241316)
chr4 (48-96)||(3042611-3042659)
chr4 (48-96)||(4205116-4205164)
chr4 (48-96)||(37663902-37663950)
chr4 (48-96)||(42199729-42199777)
[»] chr7 (19 HSPs)
chr7 (7-96)||(4902340-4902429)
chr7 (7-97)||(23402330-23402420)
chr7 (7-87)||(22955271-22955351)
chr7 (7-77)||(37854253-37854323)
chr7 (12-94)||(4618719-4618801)
chr7 (7-77)||(5781537-5781607)
chr7 (16-70)||(7742945-7742999)
chr7 (48-98)||(37346995-37347045)
chr7 (20-96)||(40381940-40382016)
chr7 (51-95)||(48928704-48928748)
chr7 (13-97)||(8133524-8133610)
chr7 (48-98)||(6546492-6546542)
chr7 (48-94)||(25691683-25691729)
chr7 (16-82)||(49002241-49002306)
chr7 (48-97)||(5657619-5657668)
chr7 (48-96)||(18797304-18797352)
chr7 (48-96)||(21991611-21991659)
chr7 (48-96)||(26524465-26524513)
chr7 (48-96)||(32432432-32432480)
[»] chr2 (22 HSPs)
chr2 (7-96)||(6177775-6177864)
chr2 (7-94)||(41643874-41643961)
chr2 (7-96)||(34441880-34441969)
chr2 (7-96)||(41713164-41713253)
chr2 (16-96)||(39788545-39788625)
chr2 (7-96)||(19073357-19073447)
chr2 (7-92)||(18947557-18947642)
chr2 (47-96)||(19093413-19093462)
chr2 (7-59)||(18779360-18779412)
chr2 (48-100)||(26357573-26357625)
chr2 (7-95)||(42005390-42005478)
chr2 (48-96)||(39167518-39167566)
chr2 (46-97)||(18514769-18514820)
chr2 (48-98)||(41465507-41465557)
chr2 (48-96)||(19424783-19424831)
chr2 (16-97)||(22963399-22963484)
chr2 (16-97)||(22997993-22998078)
chr2 (20-84)||(27138992-27139056)
chr2 (48-98)||(4763626-4763676)
chr2 (44-94)||(8429699-8429749)
chr2 (48-94)||(44285951-44285997)
chr2 (12-65)||(18059326-18059379)
[»] chr5 (22 HSPs)
chr5 (12-96)||(36055838-36055922)
chr5 (7-95)||(10237415-10237503)
chr5 (15-94)||(41417546-41417625)
chr5 (17-95)||(21320752-21320830)
chr5 (7-96)||(22616494-22616582)
chr5 (16-93)||(13380498-13380579)
chr5 (48-96)||(35933902-35933950)
chr5 (48-94)||(699152-699198)
chr5 (51-97)||(14409456-14409502)
chr5 (48-96)||(8742014-8742062)
chr5 (53-97)||(33753050-33753094)
chr5 (48-96)||(38528363-38528411)
chr5 (61-96)||(24886102-24886137)
chr5 (48-95)||(32563150-32563197)
chr5 (48-98)||(36866760-36866810)
chr5 (7-56)||(31878423-31878472)
chr5 (48-96)||(5112440-5112488)
chr5 (48-96)||(19119859-19119907)
chr5 (48-96)||(22974209-22974257)
chr5 (7-47)||(25653633-25653673)
chr5 (48-84)||(27318614-27318650)
chr5 (48-96)||(36860423-36860471)
[»] scaffold0200 (1 HSPs)
scaffold0200 (7-96)||(24776-24865)
[»] chr6 (11 HSPs)
chr6 (7-96)||(19631749-19631838)
chr6 (7-96)||(26301882-26301971)
chr6 (48-94)||(6088910-6088956)
chr6 (48-94)||(29182165-29182211)
chr6 (7-96)||(11084111-11084200)
chr6 (46-94)||(6614034-6614082)
chr6 (48-96)||(7055351-7055399)
chr6 (48-96)||(8513233-8513281)
chr6 (48-94)||(30353494-30353540)
chr6 (48-96)||(4318959-4319007)
chr6 (51-95)||(20768087-20768131)
[»] chr8 (15 HSPs)
chr8 (15-96)||(4108879-4108960)
chr8 (48-96)||(38110353-38110401)
chr8 (48-98)||(13307620-13307670)
chr8 (48-98)||(33197889-33197939)
chr8 (7-95)||(23176722-23176811)
chr8 (48-96)||(1204926-1204974)
chr8 (48-96)||(34894966-34895014)
chr8 (48-98)||(5300089-5300139)
chr8 (51-97)||(33906222-33906268)
chr8 (54-96)||(39099258-39099300)
chr8 (7-87)||(8151371-8151451)
chr8 (48-96)||(16222862-16222910)
chr8 (48-96)||(30654726-30654774)
chr8 (48-96)||(36695109-36695157)
chr8 (48-96)||(38643977-38644025)
[»] scaffold0009 (2 HSPs)
scaffold0009 (48-96)||(42348-42396)
scaffold0009 (48-96)||(100821-100869)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 123 - 358
Target Start/End: Complemental strand, 5497759 - 5497524
Alignment:
Q  123 aaaaacagattttaaattccctaaaaaacattcataaaatgatcattaatattgtttactaaaagttccacaattnnnnnnncaaacaaaatatttgcac 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||| |||    
T  5497759 aaaaacagattttaaattccctaaaaaaaattcataaaatgatcattaatattgtttactaaaagttccacaattaaaaaaacaaaaaaaatatttccac 5497660  T
Q  223 aaataaagcgtgatggcaacctctaccaatccacatgcagccattgcttttaggaagcacactctctcttgtcaaattttcctcttgaacaagtggctct 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5497659 aaataaagcgtgatggcaacctctaccaatccacatgcagccattgcttttaggaagcacactctctcttgtcaaattttcctcttgaacaagtggctct 5497560  T
Q  323 ttgcgttggtccagcagcttctaacgtggaagtact 358  Q
    |||||||||||||||||||||||| |||||||||||    
T  5497559 ttgcgttggtccagcagcttctaaagtggaagtact 5497524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 13876887 - 13876967
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||| |||||| |||||||||||||||||| || |||| ||||| |||| | ||||||||| ||||||||    
T  13876887 attaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcataacttcaccatagaattttcc 13876967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 10922771 - 10922724
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  10922771 ttaacttcaccaaaaaaatcattctcatgatttcaccataaaattttc 10922724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 16127600 - 16127539
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatga 77  Q
    |||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| ||||||    
T  16127600 attaaatacacaaatgatcaatgattgaccatttaacttcaccagaaaagtcattttcatga 16127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10758264 - 10758308
Alignment:
Q  12 atgaattaaatacacaaatgctcaataattgatcatttaacttca 56  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  10758264 atgaattaaatacacaaatgctcaatgattgaccatttaacttca 10758308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 16132555 - 16132475
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||||||||||||   |||||||||||| || |||| ||| |||  ||| ||||||||| ||||||||    
T  16132555 attaaatacacaaatgctcaataatttgccatttaacttcaccaaaaaagtcaatctattgacttcaccatagaattttcc 16132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 25943278 - 25943218
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatg 76  Q
    |||||||| || |||||||||||||||||||||||||||||  |||||| ||||| |||||    
T  25943278 attaaataaactaatgctcaataattgatcatttaacttcactagaaaattcattatcatg 25943218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 23999391 - 23999336
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaagatta 103  Q
    ||||||||| || |||||||||||| |||| |||||||||||||||||||| ||||    
T  23999391 ttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttccaatatta 23999336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 2959792 - 2959738
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaagatt 102  Q
    ||||||||||||||||| ||||| |||||| ||||||||| |||||||| |||||    
T  2959792 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcctagatt 2959738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34491473 - 34491548
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccata 87  Q
    |||||||||||||||| | ||| |||||||||    ||||||||||||||||||| |||||||| | |||||||||    
T  34491473 attaaatacacaaatgtttaatgattgatcatagaattaacttcatcagaaaaattattctcatcacttcaccata 34491548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 27227609 - 27227658
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||| || ||||||||||||||||| ||||||||| |||||||||    
T  27227609 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcca 27227658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 1547331 - 1547283
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  1547331 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 1547283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 22170798 - 22170750
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||| |||||| ||||| |||||||||||||||| ||||||||    
T  22170798 ttaacttcattagaaaagtcattttcatgatttcaccatagaattttcc 22170750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 43579292 - 43579241
Alignment:
Q  46 atttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||||  |||||| |||||||||||| ||||||||| |||||||||    
T  43579292 atttaacttcactagaaaagtcattctcatgacttcaccatagaattttcca 43579241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 27118410 - 27118328
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    |||||||||| |||||||| || ||| |  ||||||||| |||| |||| ||||| |||||| || | |||||||||||||||    
T  27118410 attaaatacataaatgctccatgattaactatttaactttatcaaaaaagtcattttcatgactttatcataaaattttccaa 27118328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 47682625 - 47682675
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||| || |||| ||| |||||||| ||||||||||||||||||||    
T  47682625 ttaacttcaccaaaaaagtcactctcatgacttcaccataaaattttccaa 47682675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 38823258 - 38823209
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||| | ||||||| |||||||||||| ||||||||| |||||||||    
T  38823258 ttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcca 38823209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 11742482 - 11742530
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||| | ||||| ||||||||||||    
T  11742482 ttaacttcaccagaaaagtcattctcataacttcacgataaaattttcc 11742530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 14758082 - 14758038
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||||| ||||||| |||||||||||| |||||| ||||||||||    
T  14758082 acttcaccagaaaagtcattctcatgacttcaccgtaaaattttc 14758038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 16415689 - 16415641
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| |||||| || ||||||||    
T  16415689 ttaacttcaccagaaaagtcattctcatgacttcaccttagaattttcc 16415641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 40640593 - 40640682
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  40640593 gtgacatggattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 40640682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 47930634 - 47930714
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||| |||||| ||||||||| ||||||||    
T  47930634 attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc 47930714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 19606879 - 19606961
Alignment:
Q  13 tgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||| | || | ||||||||| |||||||    
T  19606879 tgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataacttcaccatagaattttc 19606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 45879466 - 45879546
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||||||||||||| ||||  |||||||||| | ||||||| |||||||||||| |||| |||| ||||||||    
T  45879466 attaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatgacttcagcatagaattttcc 45879546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 38392596 - 38392673
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattt 93  Q
    |||||||||||||||| ||||| | ||| |||||||||||| || |||| |||||||||||| ||||||||| |||||    
T  38392596 attaaatacacaaatgttcaatgactgaccatttaacttcaccaaaaaagtcattctcatgacttcaccatataattt 38392673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 32180714 - 32180794
Alignment:
Q  15 aattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||||||||||||||||| ||| | ||||||||||||  |||||| |||||||||| | |||||| || |||||||    
T  32180714 aattaaatacacaaatgctcaatgattaaccatttaacttcactagaaaagtcattctcataacttcaccgtacaattttc 32180794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 42204426 - 42204341
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||||||||||||||||||| | ||||    ||||||||||||||||| ||||||||| || ||||| ||| |||||||||    
T  42204426 attaaatacacaaatgctcaataataggtcatatggttaacttcatcagaaaagtcattctcacgacttcacgatagaattttcca 42204341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 53818509 - 53818555
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  53818509 ttaacttcaccagaaaaatcattctcatgacttcaccataaaatttt 53818555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 4015499 - 4015450
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  4015499 ttaacttcatcagaaaagtcattctcatgacttcaccatagaattttcca 4015450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 49359596 - 49359677
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||||||||| ||||| ||||  ||||||||||||  | |||| ||||| |||||| ||||||||| |||||||||    
T  49359596 attaaatacacaaatgttcaatgattggccatttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttcca 49359677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 26000612 - 26000525
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||| |||||||||||||||||||| |||||||| |||||||||| || | || |||||| ||| |||| | || ||||||||||||||    
T  26000612 gtgacatgaattaaatacacaaatgttcaataatcgatcatttaattttacca-aaaaattattttcataactttaccataaaattttc 26000525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 7568678 - 7568753
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttca 82  Q
    |||| |||||||||||||||||||||||||| ||| | |||||||||||| || |||| | ||| |||||| ||||    
T  7568678 gtgacatgaattaaatacacaaatgctcaatgatttaccatttaacttcaccaaaaaagtaattttcatgacttca 7568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 44880880 - 44880794
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||| ||| |||||||||| ||||| ||||| ||||| ||||||||||||| | |||| ||||| |||| |||||||| |||||||||    
T  44880880 gtgacatggattaaatacataaatgttcaatgattgaccatttaacttcatta-aaaagtcattttcataatttcaccgtaaaatttt 44880794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 22451004 - 22450959
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||||    
T  22451004 acttcaccagaaaaatcattctcatgacttcaccatagaattttcc 22450959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 53811976 - 53812025
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||||||||||| |||||||||||| |||||| || |||||||||    
T  53811976 ttaacttcatcagaaaagtcattctcatgacttcaccgtagaattttcca 53812025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 11466863 - 11466815
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||| ||||||||| || ||||||||| ||||||||    
T  11466863 ttaacttcatcagaaaagtcattctcaagacttcaccatagaattttcc 11466815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 18272188 - 18272271
Alignment:
Q  12 atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||||||||||| ||||| ||||   | ||||| |||| |||||| |||||||||||| |||||| || ||||||||    
T  18272188 atgaattaaatacacaaatgttcaatgattggg-agttaacgtcattagaaaagtcattctcatgacttcaccgtataattttcc 18272271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 48354980 - 48354932
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || ||||||||||||||||| ||||||||| ||||||||    
T  48354980 ttaacttcaccataaaaatcattctcatgacttcaccatagaattttcc 48354932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 4556622 - 4556543
Alignment:
Q  15 aattaaatacacaaatgctcaataattgatcat-ttaacttcatcagaaaaatcattctcatgatttcaccataaaattt 93  Q
    |||||||||||||||| |||||| |||| ||||  ||||||||  |||||| ||||| |||||| ||||||||| |||||    
T  4556622 aattaaatacacaaatactcaatgattggtcatagtaacttcacgagaaaagtcattttcatgacttcaccatagaattt 4556543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 11835743 - 11835790
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||| || ||||||||||||||||| ||||||||| |||||||    
T  11835743 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttc 11835790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 25579778 - 25579731
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||| |||||||||||||||||| | || ||||||||||||||    
T  25579778 ttaacttcaccagaaaaatcattctcataacttaaccataaaattttc 25579731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 29163886 - 29163839
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||| ||||||||||||| | |||| |||||||||||||||||    
T  29163886 ttaacttcaccagaaaaatcattttaatgacttcaccataaaattttc 29163839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 37203106 - 37203055
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaag 99  Q
    |||||||||||| |||||||||| | |||| ||||||||| |||||||||||    
T  37203106 ttaacttcatcaaaaaaatcatttttatgacttcaccatagaattttccaag 37203055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 51213118 - 51213168
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||| || |||| |||||||||||| ||||||||| ||||||||||    
T  51213118 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttccaa 51213168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 20373433 - 20373482
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||| || |||||||||||| |||| ||||| |||||||||||||    
T  20373433 ttaacttcaccaaaaaaatcattcttatgacttcactataaaattttcca 20373482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 21193645 - 21193597
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| || |||||| ||||||||    
T  21193645 ttaacttcaccagaaaagtcattctcatgactttaccatagaattttcc 21193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 26941397 - 26941445
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||||||||||| |||| ||||||||| ||||||||    
T  26941397 ttaacttcaccaaaaaaatcattcttatgacttcaccatagaattttcc 26941445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 39282684 - 39282644
Alignment:
Q  56 atcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||| |||||| ||||||||| ||||||||    
T  39282684 atcagaaaaatcattttcatgacttcaccatagaattttcc 39282644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 55343421 - 55343469
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||| ||||| || ||| ||||||||| ||||||||    
T  55343421 ttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcc 55343469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 2704595 - 2704512
Alignment:
Q  13 tgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||||  ||||| |||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||    
T  2704595 tgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcc 2704512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 17612423 - 17612333
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    |||| ||||||||| |||||||||||| ||| ||||| ||||||||||||| | ||||||||||||||||| ||||||||| ||||| ||||    
T  17612423 gtgacatgaattaa-tacacaaatgcttaatgattgaccatttaacttcattaaaaaaatcattctcatgacttcaccatagaatttaccaa 17612333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 2266824 - 2266902
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||||||||||||||||||||| |||||  |||||||||||  |||||| ||||| |||||| ||||||||| ||||||    
T  2266824 attaaatacacaaatgctcaatgattgacgatttaacttcactagaaaagtcattatcatgacttcaccatataatttt 2266902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 20097451 - 20097537
Alignment:
Q  12 atgaattaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||||||||||||||||||||  ||| |||||||||    ||||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  20097451 atgaattaaatacacaaatgcggaatgattgatcatagggttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 51204672 - 51204580
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||| ||| |||||||||||||| |||||||||||||||||    ||||||||| ||||||| ||||| | |||| ||||||||| |||||||    
T  51204672 gtgacatggattaaatacacaaaagctcaataattgatcatagggttaacttcaccagaaaagtcatttttatgacttcaccatagaattttc 51204580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 38811861 - 38811812
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  38811861 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcca 38811812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 9743668 - 9743590
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||||||||||||||| |||||||||| |||||||| |||| || |||| |||||  ||||| || |||||| ||||||    
T  9743668 attaaatacacaaatgttcaataattggtcatttaatttcaccaaaaaagtcatttacatgactttaccatagaatttt 9743590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 33255570 - 33255501
Alignment:
Q  25 acaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||||||||||||  |||||||||||| || |||| | |||||| ||| ||||||||| ||||||    
T  33255570 acaaatgctcaataattggccatttaacttcaccaaaaaagtgattctcgtgacttcaccatataatttt 33255501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 38011899 - 38011854
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||    
T  38011899 acttcaccagaaaagtcattctcatgatttcaccatagaattttcc 38011854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 38812260 - 38812308
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  38812260 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 38812308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 55478058 - 55478106
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || ||||||||||||||||| ||||||||| ||||||||    
T  55478058 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 55478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 4598041 - 4597994
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||| ||||||| ||||||| |||| |||||||||||||||||    
T  4598041 ttaacttcaccagaaaagtcattctaatgacttcaccataaaattttc 4597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 27396664 - 27396618
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  27396664 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 28003152 - 28003198
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||| ||||||| |||||||||||| ||||||||| |||||||||    
T  28003152 acttcaccagaaaagtcattctcatgacttcaccatagaattttcca 28003198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 34948260 - 34948306
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||  ||||||| |||||||||||| ||||||||||||||||    
T  34948260 ttaacttcgccagaaaagtcattctcatgacttcaccataaaatttt 34948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 47236912 - 47236866
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||| | || |||||||||| |||||||||||||||||||||||    
T  47236912 ttaacttaaccaaaaaaatcattttcatgatttcaccataaaatttt 47236866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 52195645 - 52195687
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaa 90  Q
    ||||||||||||||||| |||||||||| | ||||||||||||    
T  52195645 ttaacttcatcagaaaagtcattctcataacttcaccataaaa 52195687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 52516645 - 52516599
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||| || |||| |||||||||||| ||||||||||||||||    
T  52516645 ttaacttcaccataaaagtcattctcatgacttcaccataaaatttt 52516599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 53337576 - 53337625
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||| ||||||||||||||| |||||| || |||||| |||||||||    
T  53337576 ttaactttatcagaaaaatcattatcatgactttaccatagaattttcca 53337625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 55241267 - 55241316
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||  |||||| |||||||||||| ||||||||| |||||||||    
T  55241267 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcca 55241316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 3042659 - 3042611
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||||||||| | |||||||||||||| ||||||||    
T  3042659 ttaacttcaccaaaaaaatcatttttatgatttcaccatagaattttcc 3042611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 4205164 - 4205116
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||| ||||| || ||| ||||||||| ||||||||    
T  4205164 ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcc 4205116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 37663902 - 37663950
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||| |||| ||||||| |||| ||||||||| ||||||||    
T  37663902 ttaacttcatcaaaaaagtcattcttatgacttcaccatagaattttcc 37663950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 42199777 - 42199729
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||||||||||| |||||||||||||| | ||||||    
T  42199777 ttaacttcaccaaaaaaatcattcttatgatttcaccatagatttttcc 42199729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 4902429 - 4902340
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| |||| || |||||| ||| |||||| ||||||||||||||||||    
T  4902429 gtgacatggattaaatacataaatgctcaataattgatcatttaaattcaccaaaaaaattattttcatgacttcaccataaaattttcc 4902340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 23402330 - 23402420
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||| |||||||||||||||| ||| ||||| ||||| |||||||||||| ||||||| |||||||||||| ||| ||||| |||||||||    
T  23402330 gtgacatgaattaaatacacagatgttcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcca 23402420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 22955271 - 22955351
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccata 87  Q
    |||| ||| |||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||| | |||||||||    
T  22955271 gtgacatggattaaatacacaaatgttcaataattgaccatttaacttcaccagaaaagtcattctcattacttcaccata 22955351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 37854253 - 37854323
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatga 77  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||    
T  37854253 gtgacatggattaaatacacaaatgctcaataattgaccatttaatttcaccagaaaagtcattctcatga 37854323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 4618719 - 4618801
Alignment:
Q  12 atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||||||||||||||||||| ||||| |||  ||||||||||| | || |||||||||| |||||| || ||| || ||||||    
T  4618719 atgaattaaatacacaaatgttcaatgattagtcatttaactttaccaaaaaaatcattttcatgactttaccgtagaatttt 4618801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 5781607 - 5781537
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatga 77  Q
    |||| ||| |||||||||||||||  | ||| |||||||||||||||| | ||||||||||||| ||||||    
T  5781607 gtgacatggattaaatacacaaatatttaatgattgatcatttaactttaccagaaaaatcattttcatga 5781537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7742999 - 7742945
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcatt 70  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||| |||| |||||    
T  7742999 attaaatacacaaatactcaatgattgatcattttacttcatcaaaaaagtcatt 7742945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 37347045 - 37346995
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||| || |||||||||| |||||| ||||||||||||||||||||    
T  37347045 ttaacttcaccaaaaaaatcattttcatgacttcaccataaaattttccaa 37346995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 40382016 - 40381940
Alignment:
Q  20 aatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||| |||| || ||| ||| |||||||||||||| ||||||| |||||||||| | |||||| || ||||||||    
T  40382016 aatacataaatacttaatgattaatcatttaacttcaccagaaaagtcattctcataacttcaccgtagaattttcc 40381940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 48928704 - 48928748
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||    
T  48928704 acttcaccagaaaagtcattctcatgacttcaccataaaattttc 48928748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 8133524 - 8133610
Alignment:
Q  13 tgaattaaatacacaaatgctcaataattgatca--tttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    ||||||||||||||||||||| ||| ||||||||  |||||||||| || |||| | ||||| |||| |||||  || |||||||||    
T  8133524 tgaattaaatacacaaatgcttaatgattgatcatttttaacttcaccaaaaaagttattcttatgacttcacagtagaattttcca 8133610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 6546542 - 6546492
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    |||||||||  |||||||||||||| |||| ||||||||| ||||||||||    
T  6546542 ttaacttcactagaaaaatcattcttatgacttcaccatagaattttccaa 6546492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 25691683 - 25691729
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||||||||  |||||| |||||||||||| ||||||||||||||||    
T  25691683 ttaacttcacgagaaaagtcattctcatgacttcaccataaaatttt 25691729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 49002306 - 49002241
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttca 82  Q
    ||||||||||||||| |||||| |||| |||||| ||||||| | |||||||||| |||||| ||||    
T  49002306 attaaatacacaaatactcaatgattgttcatttcacttcat-aaaaaaatcattatcatgacttca 49002241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 5657619 - 5657668
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||  |||||| |||||||||||| ||||||||| |||||||||    
T  5657619 ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcca 5657668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 18797352 - 18797304
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||| |||||||||||| ||||||||| ||||||||    
T  18797352 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 18797304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 21991659 - 21991611
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || ||||||||||||||||| |||||| || ||||||||    
T  21991659 ttaacttcaccataaaaatcattctcatgacttcaccctagaattttcc 21991611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 26524465 - 26524513
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||| ||| ||||||| |||||||||||| ||||||||| ||||||||    
T  26524465 ttaacatcaccagaaaagtcattctcatgacttcaccatagaattttcc 26524513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 32432480 - 32432432
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||||||||| || ||| ||||||||| ||||||||    
T  32432480 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc 32432432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 6177864 - 6177775
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| ||| || || ||||||||    
T  6177864 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccgtagaattttcc 6177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 41643961 - 41643874
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||||||| || |||| ||||| |||||| ||||||||| ||||||    
T  41643961 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttt 41643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 34441880 - 34441969
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||| | || |||| ||||| |||||| ||||||||| ||||||||    
T  34441880 gtgacatgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcc 34441969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 41713253 - 41713164
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||||||||||||| ||||  ||||| |||| |||||||| |||| ||||||||||||| |||||||||||| ||| ||||||||    
T  41713253 gtgacatgaattaaatacataaatattcaatgattggtcatttaatttcaccagaaaaatcattttcatgatttcactatagaattttcc 41713164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 39788545 - 39788625
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||||||||||||| |||||  |||| ||||||  |||||| ||||||| |||| ||||||||||||||||||    
T  39788545 attaaatacacaaatgctcaatgattgactatttgacttcactagaaaagtcattcttatgacttcaccataaaattttcc 39788625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 19073447 - 19073357
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatc-agaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| ||| ||||||||||||||| |||||| ||||| |||||||||||| | | ||||||||||||||| | ||||||||| ||||||||    
T  19073447 gtgacatggattaaatacacaaattctcaatgattgaccatttaacttcaccaaaaaaaatcattctcataacttcaccatagaattttcc 19073357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 18947557 - 18947642
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatt 92  Q
    |||| ||| |||||||||||||||| ||||| ||||| |||||||||||| ||||||| | ||| |||||| ||||||||| ||||    
T  18947557 gtgacatggattaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgacttcaccatagaatt 18947642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 19093462 - 19093413
Alignment:
Q  47 tttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  19093462 tttaacttcaccagaaaaatcattctcatgacttcaccataaaattttcc 19093413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 18779360 - 18779412
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatca 59  Q
    |||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  18779360 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcatca 18779412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 26357625 - 26357573
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaaga 100  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  26357625 ttaacttcatcagaaaagtcattttcatgacttcaccataaaattttccaaga 26357573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 42005478 - 42005390
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||| ||| |||||||| ||||||  |||||  ||||||||||||||||| || |||||||||| |||||| ||||||||| |||||||    
T  42005478 gtgacatggattaaataaacaaatattcaatggttgatcatttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 39167518 - 39167566
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  39167518 ttaacttcatcaaaaaaatcattctcgtgacttcaccataaaattttcc 39167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 18514769 - 18514820
Alignment:
Q  46 atttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  18514769 atttaacttcatcaaaaaagtcattctcatgacttcactataaaattttcca 18514820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 41465557 - 41465507
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||||||    
T  41465557 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttccaa 41465507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 19424783 - 19424831
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| |||||||  ||||||||||| ||||||||||||||||||    
T  19424783 ttaacttcaccagaaaagccattctcatgacttcaccataaaattttcc 19424831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 22963484 - 22963399
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||||||| ||| ||| |||| ||||    ||||||| | ||||||| ||||||| |||| |||||||||||||||||||    
T  22963484 attaaatacacaaaagctaaatgattggtcataggattaactttaccagaaaagtcattcttatgacttcaccataaaattttcca 22963399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 22997993 - 22998078
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||||||||||| ||| ||| |||| ||||    ||||||| | ||||||| ||||||| |||| |||||||||||||||||||    
T  22997993 attaaatacacaaaagctaaatgattggtcataggattaactttaccagaaaagtcattcttatgacttcaccataaaattttcca 22998078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 27138992 - 27139056
Alignment:
Q  20 aatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcacc 84  Q
    |||||||||||| ||||| ||||  ||||||||||||||| |||| ||||| |||||| ||||||    
T  27138992 aatacacaaatgatcaatgattggccatttaacttcatcaaaaaagtcattttcatgacttcacc 27139056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 4763676 - 4763626
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||||||||||| ||||| |||||| |||| |||| ||||||||||    
T  4763676 ttaacttcatcagaaaagtcattttcatgacttcatcatagaattttccaa 4763626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 8429699 - 8429749
Alignment:
Q  44 tcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||||| ||||||||||||||||| |  | ||||||||||||||||    
T  8429699 tcatttaactttatcagaaaaatcattcttacaacttcaccataaaatttt 8429749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 44285997 - 44285951
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    |||||||||||||||||||||||| ||||| |||||| || ||||||    
T  44285997 ttaacttcatcagaaaaatcattcgcatgacttcaccgtataatttt 44285951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 18059326 - 18059379
Alignment:
Q  12 atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaa 65  Q
    |||||||||||||||||||  ||||||||||| |||||||| ||| || |||||    
T  18059326 atgaattaaatacacaaatattcaataattgaccatttaacatcaccaaaaaaa 18059379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 36055838 - 36055922
Alignment:
Q  12 atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||  |||||| ||||||||||||  |||||||||||||||||    
T  36055838 atgaattaaattcacaaatgctcaatgattgaccatttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcc 36055922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 10237503 - 10237415
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||||  |||||| ||||| |||||| ||||| ||| |||||||    
T  10237503 gtgaaatgaattaaatacacaaatgctcaatgattgaccatttaacttcactagaaaagtcattttcatgacttcacaatagaattttc 10237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 41417546 - 41417625
Alignment:
Q  15 aattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||||||||||| ||||| ||| | ||||||||||||  |||||||||||||| | |||||||||||| ||||||    
T  41417546 aattaaatacacaaatgttcaatgattaaccatttaacttcactagaaaaatcattcttacgatttcaccatataatttt 41417625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 21320830 - 21320752
Alignment:
Q  17 ttaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |||| ||||| | || | ||||||||| |||||||    
T  21320830 ttaaatacacgaatgctcaatgattgatcatttaacttcatcaaaaaagtcatttttattacttcaccatagaattttc 21320752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 22616582 - 22616494
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| ||| |||||||||| || |||||||| ||||  |||||||||||| ||||||| ||||| |||||| ||||||||| ||||||||    
T  22616582 gtgacatggattaaatacataa-tgctcaatgattggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcc 22616494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13380579 - 13380498
Alignment:
Q  16 attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattt 93  Q
    ||||||||||||||| |||| ||| |||||||    |||||||||  |||||| |||||||||||| |||||||||||||||    
T  13380579 attaaatacacaaatactcattaagtgatcatagggttaacttcactagaaaagtcattctcatgacttcaccataaaattt 13380498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 35933950 - 35933902
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  35933950 ttaacttcatcaaaaaaatcattctcatgacttcaccatacaattttcc 35933902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 699198 - 699152
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||    
T  699198 ttaacttcatcagaaaagtcattctcataacttcaccataaaatttt 699152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 14409456 - 14409502
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||||    
T  14409456 acttcaccagaaaaatcattctcatgacttcaccatagaattttcca 14409502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 8742014 - 8742062
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  8742014 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 8742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 33753050 - 33753094
Alignment:
Q  53 ttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||    
T  33753050 ttcaccagaaaaatcattctcatgatttcactatagaattttcca 33753094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 38528363 - 38528411
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||||||||    
T  38528363 ttaacttcatcagaaaaaccattttcatgacttcaccatagaattttcc 38528411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 24886137 - 24886102
Alignment:
Q  61 aaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||||||||||||||||||||||||||||||    
T  24886137 aaaagtcattctcatgatttcaccataaaattttcc 24886102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 32563197 - 32563150
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    ||||||||||||||||||||||| | |||| ||||||||| |||||||    
T  32563197 ttaacttcatcagaaaaatcattttaatgacttcaccatagaattttc 32563150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 36866810 - 36866760
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||| ||||||||||||| || ||| ||||||||| ||||||||||    
T  36866810 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttccaa 36866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 31878472 - 31878423
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttca 56  Q
    |||| |||||||||||||||||||||| ||| |||||  |||||||||||    
T  31878472 gtgacatgaattaaatacacaaatgcttaatgattgacaatttaacttca 31878423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 5112440 - 5112488
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||| ||||| |||||| ||||||||||||||||||    
T  5112440 ttaacttcaccaaaaaagtcattttcatgacttcaccataaaattttcc 5112488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 19119907 - 19119859
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||| |||||||||||| ||||||||| ||||||||    
T  19119907 ttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcc 19119859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 22974209 - 22974257
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || ||||||||||||||| | ||||||||| ||||||||    
T  22974209 ttaacttcaccaaaaaaatcattctcataacttcaccatagaattttcc 22974257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 25653673 - 25653633
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcat 47  Q
    |||| ||||||||||||||||||| |||||| |||||||||    
T  25653673 gtgatatgaattaaatacacaaatactcaatgattgatcat 25653633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 27318614 - 27318650
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcacc 84  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  27318614 ttaacttcaccagaaaaatcattctcatgacttcacc 27318650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 36860471 - 36860423
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||||||||| || ||| ||||||||| ||||||||    
T  36860471 ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc 36860423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 24776 - 24865
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||| | ||  ||||| ||||||||    
T  24776 gtgacatgaattaaatacacaaatgctcaatgattgaccatttaatttcaccagaaaaatcattctcataactttgccatagaattttcc 24865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 19631838 - 19631749
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| ||| |||||||||||||||| ||||| |||| ||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||    
T  19631838 gtgacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcc 19631749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 26301882 - 26301971
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||||||||||||| ||||  ||||| |||| |||||||||||||  | |||||||||| | |||| ||||||||| ||||||||    
T  26301882 gtgacatgaattaaatacataaatattcaatgattggtcatttaacttcacgaaaaaaatcatttttatgacttcaccatataattttcc 26301971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 6088956 - 6088910
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  6088956 ttaacttcaccagaaaaatcattctcatgacttcaccatagaatttt 6088910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 29182211 - 29182165
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||    
T  29182211 ttaacttcatcaataaaatcattctcatgacttcaccataaaatttt 29182165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 11084111 - 11084200
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| ||| |||||||||| ||||  ||||| |||| ||||||||||| | ||||||| | ||| |||||| ||||||||| ||||||||    
T  11084111 gtgacatggattaaatacataaatattcaatgattggtcatttaactttaccagaaaagttattttcatgacttcaccatagaattttcc 11084200  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 6614034 - 6614082
Alignment:
Q  46 atttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| ||||||    
T  6614034 atttaacttcaccagaaaagtcattcttatgatttcaccatataatttt 6614082  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 7055351 - 7055399
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||||||||||| |||| ||||||||||||||||||    
T  7055351 ttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttcc 7055399  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 8513281 - 8513233
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  8513281 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 8513233  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 30353494 - 30353540
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt 94  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  30353494 ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 4318959 - 4319007
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||| |||||||||||| ||||||||| ||||||||    
T  4318959 ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 4319007  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 20768131 - 20768087
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttc 95  Q
    |||||| ||||||| |||||||||||| ||||||||| |||||||    
T  20768131 acttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 4108879 - 4108960
Alignment:
Q  15 aattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||  ||||| |||| ||||||||||| | || |||| ||||| |||||| ||||||||||||||||||    
T  4108879 aattaaatacacaaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatgacttcaccataaaattttcc 4108960  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 38110401 - 38110353
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  38110401 ttaacttcatcagaaaaatcattttcatgacttcaccataaaattttcc 38110353  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 13307670 - 13307620
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  13307670 ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttccaa 13307620  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 33197939 - 33197889
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    ||||||| ||||||||||| |||||||||| ||||||||| ||||||||||    
T  33197939 ttaacttaatcagaaaaattattctcatgacttcaccatagaattttccaa 33197889  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 23176722 - 23176811
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccata-aaattttc 95  Q
    |||| ||| ||||| |||||||||  ||||| |||| ||||||||||||| || |||| ||||| |||||| ||||||||| ||||||||    
T  23176722 gtgacatgcattaagtacacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgacttcaccatagaaattttc 23176811  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 1204974 - 1204926
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||| |||||||||||| |||||| |||||||||||    
T  1204974 ttaacttcaccagaaaagtcattctcatgacttcaccgtaaaattttcc 1204926  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 34895014 - 34894966
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||| ||||| |||||| ||||||||| ||||||||    
T  34895014 ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcc 34894966  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 5300089 - 5300139
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa 98  Q
    |||||||||| | |||| |||||||||||| ||||||||| ||||||||||    
T  5300089 ttaacttcattaaaaaagtcattctcatgacttcaccatagaattttccaa 5300139  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 33906268 - 33906222
Alignment:
Q  51 acttcatcagaaaaatcattctcatgatttcaccataaaattttcca 97  Q
    |||||| ||||||| |||||||||| ||||||||||| |||||||||    
T  33906268 acttcaccagaaaagtcattctcataatttcaccatagaattttcca 33906222  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 39099258 - 39099300
Alignment:
Q  54 tcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||    
T  39099258 tcatcagaaaagtcattctcatgacttcaccatagaattttcc 39099300  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 8151371 - 8151451
Alignment:
Q  7 gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccata 87  Q
    |||| ||| ||||||| |||||||  ||||| |||| ||||||||||||| || |||| ||||| |||||| | |||||||    
T  8151371 gtgacatggattaaatgcacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgactgcaccata 8151451  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 16222910 - 16222862
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    |||| |||| ||||||| ||||||||||||||||||| || ||||||||    
T  16222910 ttaaattcaccagaaaagtcattctcatgatttcaccgtagaattttcc 16222862  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 30654726 - 30654774
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || |||||||| ||| |||| ||||||||||||||||||    
T  30654726 ttaacttcaccaaaaaaatcactcttatgacttcaccataaaattttcc 30654774  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 36695109 - 36695157
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||||||||||| ||||| || ||| ||||||||| ||||||||    
T  36695109 ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcc 36695157  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 38644025 - 38643977
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||| | || |||| |||||||||||||||||||||| ||||||||    
T  38644025 ttaacttgaccaaaaaagtcattctcatgatttcaccatagaattttcc 38643977  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 42396 - 42348
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  42396 ttaacttcaccagaaaaattattctcatgacttcaccataaaattttcc 42348  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 100869 - 100821
Alignment:
Q  48 ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc 96  Q
    ||||||||| || ||||||||||||||||| ||||||||| ||||||||    
T  100869 ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 100821  T

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