View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_20 (Length: 375)
Name: NF17661_high_20
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 188612 - 188968
Alignment:
| Q |
16 |
aaattcagtagcaagttttagtattcattagaactttcaataatataaggcaaatagttgagatttttcttgtgtgt--taaggtgcgtgggtgacttta |
113 |
Q |
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| T |
188612 |
aaattcagtagcaagttttagtattcattagaactttcaataatataaggcaaatagttgagatttttcttgtgtgtgttaaggtgcgtgggtgacttta |
188711 |
T |
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| Q |
114 |
caccaaatttataaccagcatatcatacnnnnnnngacagaaccaacatatcatacttat-----aactgcacaaataaggtattaccctgacttaagag |
208 |
Q |
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| T |
188712 |
caccaaatttataaccagcatatcatactttttttgaccgaaccaacatatcatacttatattataactgcacaaataaggtattaccctgacttaagag |
188811 |
T |
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| Q |
209 |
agatacatatgatatacatctaacctgaccataaatagaagaatattgttgcaaggaagttatatatgatggcatgatgccaaatattttgagtggatat |
308 |
Q |
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| T |
188812 |
agatacatatgatatacatctaacctgaccataaatagaagaatattgttgcaaggaagttatatatgatggcatgatgccaaatattttgagtggatat |
188911 |
T |
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| Q |
309 |
gacatttcattcattatgcgcgcacatccactttatgagttcgagagacaagaatta |
365 |
Q |
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| T |
188912 |
gacatttcattcattatgcgcgcgcatccactttatgagttcgagagacaagaatta |
188968 |
T |
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