View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_21 (Length: 371)
Name: NF17661_high_21
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 34 - 358
Target Start/End: Complemental strand, 1141406 - 1141079
Alignment:
| Q |
34 |
attttcaaacaaatccgaacctttaaattcttttaagagatccgatagtataacataagtggtccaccagtgagggac---attgctccctcaccttaga |
130 |
Q |
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| T |
1141406 |
attttcaaacaaatccgaacctttaaattcttttaagagatccgatagtataacataagtggtccaccggtgagggacttcattgctccctcaccttaga |
1141307 |
T |
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| Q |
131 |
atccaccataaaaaatatttggaatgttcacctctaaaataaaaaagaacttatcaagaaagctttttcccggacacgacgggaactagctaatatgttt |
230 |
Q |
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| T |
1141306 |
atccaccataaaaaatatttggaatgttcacctctaaaataaaaaagaacttatcaagaaagctttttcccggacccgacaggaactagctaatatgttt |
1141207 |
T |
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| Q |
231 |
cttctaactagaaagcttacagttacacatttatacaaaggtcattcatcaaataatgaacagccaatgcaaggctcaattagcagcggtgaaggtaaac |
330 |
Q |
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| T |
1141206 |
cttctaactagaaagcttacagttacacatttatacaaaggtcattcatcaaataatgaacagccaatgcaaggctcaattagcagcggtgaaggtaaac |
1141107 |
T |
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| Q |
331 |
taaaagattcaaatctctacagaataat |
358 |
Q |
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| T |
1141106 |
taaaagattcaaatctctacagaataat |
1141079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 1142146 - 1142200
Alignment:
| Q |
45 |
aatccgaacctttaaattcttttaagagatccgatagtataacataagtggtcca |
99 |
Q |
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| T |
1142146 |
aatctgaacctttaaattcttttaagagatctgatggtataacataagtggtcca |
1142200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 30201989 - 30202036
Alignment:
| Q |
93 |
tggtccaccagtgagggac---attgctccctcaccttagaatccacc |
137 |
Q |
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| T |
30201989 |
tggtccaccggtgagggacttaattgctccctcaccttagaatccacc |
30202036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 1597128 - 1597022
Alignment:
| Q |
34 |
attttcaaacaaatccgaacctttaaattcttttaagagatccgatagtataacataagtggtccaccagtgagggac---attgctccctcaccttaga |
130 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||| ||||||||||| |
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| T |
1597128 |
attttcaaacaaatctaaacccttaaattcttttaagagatctgatggtataacataagtggtccatcagtgaggaacttaattgctcactcaccttaga |
1597029 |
T |
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| Q |
131 |
atccacc |
137 |
Q |
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||||||| |
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| T |
1597028 |
atccacc |
1597022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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