View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_26 (Length: 343)
Name: NF17661_high_26
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 54988376 - 54988058
Alignment:
| Q |
9 |
gaacaatataatgtccgaaactatactatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgat |
108 |
Q |
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| T |
54988376 |
gaacaatataatgtccgaaactatactatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgat |
54988277 |
T |
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| Q |
109 |
attgatcaacagtaacatcgccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatc |
208 |
Q |
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| T |
54988276 |
attgatcaacagtaacatcaccgttacttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatc |
54988177 |
T |
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| Q |
209 |
tagaagacactgaaatgttgttatcatgacctggtttatgagtgaagacatcccagtcgctcaaacctttgccatcactcaagtaagcaccttcatacta |
308 |
Q |
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| T |
54988176 |
tagaagacacggaaatgttgttatcatgacctggtttatgagtgaagacatcccagttgctcaaacctttgccatcactcaagtaagcaccttcatacta |
54988077 |
T |
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| Q |
309 |
taatattaagtttaataat |
327 |
Q |
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| T |
54988076 |
taatattaagtttaataat |
54988058 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 7918865 - 7918832
Alignment:
| Q |
274 |
cctttgccatcactcaagtaagcaccttcatact |
307 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
7918865 |
ccttttccatcactcaagtaagcaccttcatact |
7918832 |
T |
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