View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_high_38 (Length: 276)
Name: NF17661_high_38
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 7601859 - 7602124
Alignment:
| Q |
3 |
tgttgagctcttcagatgacttgt---agccggttgagactctgagggtgaatgagtgaagtgagatgaagtatggtaagatgaagatcggtaaaaattt |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7601859 |
tgttgagctcttcagatgacttgttgtagccggttgagactctgagggtgaatgagtgaagtgagatgaagtatggtaagatgaagatcggtaaaaattt |
7601958 |
T |
|
| Q |
100 |
accataatcatctcgaaatgatataaatttataattggttttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattctttt |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7601959 |
accataatcatctcggaatgatataaatttataattggttttgttaacgagtgtttttgagacactctttaagtatcttcaatttaaaaattattctttt |
7602058 |
T |
|
| Q |
200 |
aagacgttaaatattacaaattacaacacattttacctatgttattgttttctttacgatgatgat |
265 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7602059 |
aagacgttaaatattacaaattacaatacattttacctatgttattgttttctttacgatgatgat |
7602124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 34898932 - 34898991
Alignment:
| Q |
162 |
cactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| || | || || ||||||||||| |
|
|
| T |
34898932 |
cactctttaaggatcttcaatttaaaaattattttttcaaaaagtcaattattacaaatt |
34898991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 167956 - 167916
Alignment:
| Q |
161 |
acactctttaagtatcttcaatttaaaaattattcttttaa |
201 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
167956 |
acactctttaagtatctcaaatttaaaaattattcttttaa |
167916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 44592839 - 44592917
Alignment:
| Q |
140 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
218 |
Q |
| |
|
||||| |||||||||| || |||||||||||| ||| ||||||| |||||||||||||| | ||||| |||||||| |
|
|
| T |
44592839 |
ttgttaacgagtgtttctggaacactctttaaatattcaaaatttaataattattcttttaaaaagttaactattacaa |
44592917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 11721011 - 11720933
Alignment:
| Q |
140 |
ttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaa |
218 |
Q |
| |
|
||||| |||||||| ||||| |||||||||| ||| | ||||||| |||||||||||||||| || || |||||||| |
|
|
| T |
11721011 |
ttgttaacgagtgtctttgagtcactctttaaacatcctaaatttaacaattattcttttaagaagtcaactattacaa |
11720933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 15458417 - 15458485
Alignment:
| Q |
163 |
actctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaattacaacacatt |
231 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||||| || | ||||||| |||||||||| || ||||| |
|
|
| T |
15458417 |
actctttaaagatctccaatttaaaaagtattctttaaaaaagttaaatgttacaaattataatacatt |
15458485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 47308609 - 47308526
Alignment:
| Q |
137 |
gttttgttgacgagtgtttttgaaacactctttaagtatcttcaatttaaaaattattcttttaagacgttaaatattacaaatt |
221 |
Q |
| |
|
|||||| | |||||||| || |||||||||||||| |||| |||||| ||||||||| || || || |||||||||||||||| |
|
|
| T |
47308609 |
gttttgctaacgagtgtcttcgaaacactctttaaaaatctaaaatttataaattattccttcaaaac-ttaaatattacaaatt |
47308526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University