View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_43 (Length: 251)
Name: NF17661_high_43
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 44801674 - 44801453
Alignment:
| Q |
18 |
aatgtctacggctataagttgattagaatatgaactagtgaaccggacaaactaaaccaatctaatatgtaaaatacaacgagcactatgcaaatagnnn |
117 |
Q |
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| T |
44801674 |
aatgtctacggctataagttgattaga---tgaactagtgaaccggacaaactaaaccaatctaatatgtaaaatacaacgagcactatgcaaatagttt |
44801578 |
T |
|
| Q |
118 |
nnnnaattaaattgtagtaaaatttatgtcttacatatgtgatggtnnnnnnnngtccactttcacacggtccctttcataagaaaccatctctctcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44801577 |
ttttaattaaattgtagtaaaatttatgtcttacatatgtgatggtaaaaaaaagtccactttcacacggtccctttcataagaaaccatctctctcaaa |
44801478 |
T |
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| Q |
218 |
cacttagaaaccctaactttcatct |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
44801477 |
cacttagaaaccctaactttcatct |
44801453 |
T |
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