View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_high_46 (Length: 245)
Name: NF17661_high_46
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 29677911 - 29677678
Alignment:
| Q |
1 |
aaatctactataaagaataatatatgttagcttagataaactcttcaagaaaatcactgatgttatgaagaagcgtttatcaatctcaatctaataaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29677911 |
aaatctactataaagaataatatatgttagcttagataaactcttcaagaaaatcactgatgttatgaagaagcgtttatcaatctcaatctaataaagt |
29677812 |
T |
|
| Q |
101 |
gttttccaaagagactccaggcagtaagcatatttcaaaagtaccaatcaactaaaacaaaggaaactcaaaattaactacaatgaaaatgtctaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29677811 |
gttttccaaagagactccaggcagtaagcatatttcaaaagtaccaatcaactaaaacaaaggaaactcaaaattaactacaatgaaaatgtctaaacca |
29677712 |
T |
|
| Q |
201 |
tgtagcacaacttgcaataaactaaaagaataat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29677711 |
tgtagcacaacttgcaataaactaaaagaataat |
29677678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 28126297 - 28126103
Alignment:
| Q |
40 |
actcttcaagaaaatcactgatgttatgaagaagcgtttatcaatctcaatctaataaagtgttttccaaagagactccaggcagtaagcatatttcaaa |
139 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28126297 |
actcttcaagaaaatcactgatattatgaagaagcgtttgtcaatctccatctagtaaaatgttttccaaagtgactctgggcagtaagcatatttcaaa |
28126198 |
T |
|
| Q |
140 |
agtaccaatcaactaaaacaaaggaaactcaaaattaactacaatgaaaatgtctaaactatgtagcacaacttgcaataaactaaaagaataat |
234 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28126197 |
agtaccaatcaactaaaacaaaggaaagtcaaaattaactacaatgaaaatatctaaactgtgtagcacaacttgcaataaactaaaagaataat |
28126103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 29678255 - 29678139
Alignment:
| Q |
66 |
tgaagaagcgtttatcaatctcaatctaataaagtgttttccaaagagactccaggcagtaagcatatttcaaaagtaccaatcaactaaaacaaaggaa |
165 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||| ||| |||||| | ||| ||||||||| |||| |||||||||||||| ||||| || | || |||| |
|
|
| T |
29678255 |
tgaacaagtgtttatcaatctcaatctgataaacagttgtccaaataaacttcaggcagtaggcatgtttcaaaagtaccagtcaacaaagaaaagggaa |
29678156 |
T |
|
| Q |
166 |
actcaaaattaactaca |
182 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
29678155 |
actcagaagtaactaca |
29678139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 43946929 - 43946806
Alignment:
| Q |
71 |
aagcgtttatcaatctcaatctaataaagtgttttccaaagagactccaggcagtaagcatatttcaaaagtaccaatcaactaaaacaaaggaaactca |
170 |
Q |
| |
|
|||| |||||| || ||| ||||||||| ||||||||||| | |||| || || || ||||||||||| ||||||| ||||| |||| ||||| |
|
|
| T |
43946929 |
aagcatttatcgatttcagtctaataaaatgttttccaaatacactcgagacaataggcatatttcaatagtaccactcaac-------caggagactca |
43946837 |
T |
|
| Q |
171 |
aaattaactacaatgaaaatgtctaaactat |
201 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |
|
|
| T |
43946836 |
aaattaactacaatgaaagggcctaaactat |
43946806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 20873811 - 20873922
Alignment:
| Q |
63 |
ttatgaagaagcgtttatcaatctcaatctaataaagtgttttccaaagagactccaggcagtaagcatatttcaaaagtaccaatcaactaaaacaaag |
162 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| ||| |||||| || ||||||||| |||| |||| || ||||||||| |||||||||||||| |
|
|
| T |
20873811 |
ttatgaagaagcgtttttcaatctaaatctaaaaaaatgttttaaaagtagactccagaaagtagaaatatgtccaaagtaccacacaactaaaacaaag |
20873910 |
T |
|
| Q |
163 |
gaaactcaaaat |
174 |
Q |
| |
|
||| |||||||| |
|
|
| T |
20873911 |
gaagctcaaaat |
20873922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 19656903 - 19656942
Alignment:
| Q |
149 |
caactaaaacaaaggaaactcaaaattaactacaatgaaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19656903 |
caactaaaacaaaggaaactcaaaatcaactataatgaaa |
19656942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 33838802 - 33838834
Alignment:
| Q |
148 |
tcaactaaaacaaaggaaactcaaaattaacta |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
33838802 |
tcaactacaacaaaggaaactcaaaattaacta |
33838834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 33842752 - 33842784
Alignment:
| Q |
148 |
tcaactaaaacaaaggaaactcaaaattaacta |
180 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
33842752 |
tcaactacaacaaaggaaactcaaaattaacta |
33842784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University