View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_48 (Length: 242)
Name: NF17661_high_48
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 6718955 - 6719195
Alignment:
| Q |
5 |
atatactatgtgtgtttactccaacttttaaaattcacggtggaagaattcttaattcacggtcgcagctgcccccaccaaatacattctatgactnnnn |
104 |
Q |
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| T |
6718955 |
atatactatgtgtgtttactccaacttttaaaattcacggtggaagaattcttaattcacggtcgcagctgcccccaccaaatacattctatgactaaaa |
6719054 |
T |
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| Q |
105 |
nnnnntaaacaaatctttaaggttgttacctgttgatttactactattatttgacaaaaacttgaaatttaccggcaaacttgtttttaaaaactagttt |
204 |
Q |
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| T |
6719055 |
aaaaataaacaaatttttaaggttgttacctgttgatttactactattatttgacaaaaacttgaaatttaccggcaaacttgtttttaaaaactagttt |
6719154 |
T |
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| Q |
205 |
at---ccagatgagacatcaataaaaaggtttattattact |
242 |
Q |
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| T |
6719155 |
atccaccagatgggacatcaataaaaaggtttattattact |
6719195 |
T |
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