View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_50 (Length: 239)
Name: NF17661_high_50
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28722140 - 28721919
Alignment:
| Q |
1 |
tgaatagtcataacatggcaactgctggtggaatttttaggaatgtaaatggagtgtgctagttttgctcaatatttaggccttgataatgctttgtttg |
100 |
Q |
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| T |
28722140 |
tgaatagtcataacatggcaacagctggtggaatttttaggaatgtaaatggagtgtac-agttttgcttaatatttaggccttgataatgctttgtttg |
28722042 |
T |
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| Q |
101 |
ctgaactaactactgcaatagctattgaacaagcaacttcaaaaggttatactagtttaagggacatgtggcttaactacttacttctaacaagtaacaa |
200 |
Q |
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| T |
28722041 |
ctgaactaactactgcaatagctattgaacaagcaacttcaaaaggttatattagtttaagggacatgtggcttaactgcttacttctaacaagtaacaa |
28721942 |
T |
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| Q |
201 |
gaaatttttcgctatttatatat |
223 |
Q |
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||||||||| ||||||||||||| |
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| T |
28721941 |
gaaattttttgctatttatatat |
28721919 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 38903276 - 38903335
Alignment:
| Q |
155 |
gtttaagggacatgtggcttaactacttacttctaacaagtaacaagaaatttttcgcta |
214 |
Q |
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|||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||| |||| |
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| T |
38903276 |
gtttaaggaacatgtggcttaactgcttactgctaacaagtaacatgaaattttttgcta |
38903335 |
T |
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