View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_high_54 (Length: 225)
Name: NF17661_high_54
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 46461712 - 46461517
Alignment:
| Q |
14 |
cacagataatgaggaggctttttattatggaacttacttacaaggagtcaaatagctccatgtcgaaactctcttcaagtttctaggattcnnnnnnnnn |
113 |
Q |
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| T |
46461712 |
cacagataatgaggaggctttttattatggaacttacttacaaggagtcaaatagctccatgtcgaaactttcttcaagtttctagcattcaaaaaaaga |
46461613 |
T |
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| Q |
114 |
nnnnnn--catgaaagaatacaacacaaatcatacatcatgtttcttaaatatttcttttccccagacttttgccaggggtcatgcatctcaggat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46461612 |
aaaaaaaacatgaaagaatacaacacaaatcatacatcatgtttcttaaatatttcttttccccagacttttgccaggggtcatgcatctcaggat |
46461517 |
T |
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