View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_1 (Length: 834)
Name: NF17661_low_1
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 804; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 15 - 818
Target Start/End: Original strand, 10378487 - 10379290
Alignment:
| Q |
15 |
caaataacatcaaccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378487 |
caaataacatcaaccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccat |
10378586 |
T |
|
| Q |
115 |
gcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378587 |
gcgtacacttatgccacatttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgac |
10378686 |
T |
|
| Q |
215 |
gcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378687 |
gcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaa |
10378786 |
T |
|
| Q |
315 |
aaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10378787 |
aaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccatcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagta |
10378886 |
T |
|
| Q |
415 |
cagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaatt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10378887 |
cagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaatt |
10378986 |
T |
|
| Q |
515 |
ggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10378987 |
ggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttc |
10379086 |
T |
|
| Q |
615 |
tgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttct |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10379087 |
tgatttagattatcatgttaacatgatacatgcacttgatctctgttgtgtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttct |
10379186 |
T |
|
| Q |
715 |
ctgttgctagcataaatgatggaataatcattgttggaggaaaatcaaatattggcaaagtagtaggtccaattaaagaacacaatgaggttgttttttc |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10379187 |
ctgttgctagcataaatgatggaataatcattgttggaggaaaatcaaatattggcaaagtagtaggtccaattaaagaacacaatgaggttgttttttc |
10379286 |
T |
|
| Q |
815 |
tagt |
818 |
Q |
| |
|
|||| |
|
|
| T |
10379287 |
tagt |
10379290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 390 - 553
Target Start/End: Original strand, 10367337 - 10367500
Alignment:
| Q |
390 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
489 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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|
| T |
10367337 |
ctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
|
| Q |
490 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
553 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
10367437 |
aatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 716 - 813
Target Start/End: Original strand, 10367505 - 10367602
Alignment:
| Q |
716 |
tgttgctagcataaatgatggaataatcattgttggaggaaaatcaaatattggcaaagtagtaggtccaattaaagaacacaatgaggttgtttttt |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10367505 |
tgttgctagcataaatgatggaataatcattgttggaggaaaatcaaatattggcaaagtagtaggtccaattaaagaacacaatgaggttgtttttt |
10367602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 35976592 - 35976513
Alignment:
| Q |
28 |
ccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcc |
109 |
Q |
| |
|
||||||||||||||||||| | | |||||| ||||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
35976592 |
ccaagttgtgaccatgattcacaagcttatccacacaacaattcccttcgagaaaaatatgagatgaaag--tggaaatgcc |
35976513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 34796614 - 34796568
Alignment:
| Q |
48 |
gctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga |
94 |
Q |
| |
|
||||||||||| | ||||||||| ||||| ||||||||||||||||| |
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|
| T |
34796614 |
gctaacttatccgcacaacaattaccttcacgaaaaatatgagatga |
34796568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 133 - 378
Target Start/End: Original strand, 31329213 - 31329456
Alignment:
| Q |
133 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
232 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
|
|
| T |
31329213 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31329311 |
T |
|
| Q |
233 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
329 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
31329312 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31329409 |
T |
|
| Q |
330 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
378 |
Q |
| |
|
||| ||||||| | |||||||||||| ||||||| |||||||||||| |
|
|
| T |
31329410 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31329456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 133 - 378
Target Start/End: Original strand, 31335934 - 31336177
Alignment:
| Q |
133 |
tttcaaagagaaaatgaaactaacgaagggttccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatgg |
232 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |
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|
| T |
31335934 |
tttcgaagagaaaatggaactaacgaagggttcccgaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatgg |
31336032 |
T |
|
| Q |
233 |
caaattccagaaccaacacaaagccaaataactcaga---ctcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgata |
329 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
31336033 |
aaaattccagagccaacacaaatccaaataact-agacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgata |
31336130 |
T |
|
| Q |
330 |
atcacgaaaaatgccaccacaagcagccaagccatcaacaactgaacca |
378 |
Q |
| |
|
||| ||||||| | |||||||||||| ||||||| |||||||||||| |
|
|
| T |
31336131 |
ttcatgaaaaatactaccacaagcagctaagccat--acaactgaacca |
31336177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 31326552 - 31326664
Alignment:
| Q |
15 |
caaataacatcaaccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaaggatggaaatgcctccat |
114 |
Q |
| |
|
|||||||||||| |||||| || ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31326552 |
caaataacatcagccaagtcgtaaccataatttgctaacttatccgcacaacaatttccttcgcgaaaaatatgagatgaaatgatggaaatgcctccat |
31326651 |
T |
|
| Q |
115 |
gcgtacacttatg |
127 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
31326652 |
gcgtacaattatg |
31326664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 407 - 524
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
407 |
ttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttg |
506 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| || || || ||| ||||||||| | |||| |||||||| || |
|
|
| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
|
| Q |
507 |
caagaattggagttcctt |
524 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 22523103 - 22523149
Alignment:
| Q |
48 |
gctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga |
94 |
Q |
| |
|
||||||||||| | ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22523103 |
gctaacttatccgcacaacaattaccttcacgaaaaatatgagatga |
22523149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 27854690 - 27854770
Alignment:
| Q |
15 |
caaataacatcaaccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaa |
96 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| || |||| ||||| ||||| ||| |||||||| |||| |
|
|
| T |
27854690 |
caaaaaacatcaaccaagccatgaccatgatttgctaacttatccgtgcaac-atttcgttcgcaaaagatatgagaagaaa |
27854770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 20937114 - 20937160
Alignment:
| Q |
48 |
gctaacttatctgtacaacaatttccttcgcgaaaaatatgagatga |
94 |
Q |
| |
|
||||||||||| | ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
20937114 |
gctaacttatccgcacaacaattaccttcacgaaaaatatgagatga |
20937160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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